Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 2.9e-177 625.2 323 100.0
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 8.4e-137 490.7 323 77.4
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 2.8e-132 475.7 323 74.0
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 4.8e-132 474.9 322 76.1
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 5.9e-130 468.0 322 75.2
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 7.6e-130 467.6 323 72.4
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 3.8e-129 465.3 324 74.4
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 1.1e-128 463.8 329 73.3
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 1.4e-128 463.4 324 72.5
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 2.5e-128 462.6 326 73.3
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 1.2e-127 460.3 324 72.8
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 1.6e-127 459.9 322 74.5
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 2.3e-126 456.1 324 71.0
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 1.5e-125 453.4 324 71.9
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 1.9e-125 453.0 322 73.3
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 2.5e-125 452.6 323 72.4
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 3.3e-125 452.2 321 73.8
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 5.7e-125 451.4 325 70.5
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 5.7e-125 451.4 324 71.0
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 7.4e-125 451.1 324 70.4
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 7.4e-125 451.1 323 72.8
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 9.7e-125 450.7 324 70.4
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.3e-124 450.3 330 69.4
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 1.6e-124 449.9 337 71.2
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.8e-124 449.1 323 70.9
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 1.1e-123 447.2 323 71.5
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 1.1e-123 447.2 324 69.8
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 5.3e-123 444.9 325 70.5
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 1.3e-121 440.3 322 68.9
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.3e-121 440.3 323 70.3
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.7e-121 439.9 323 70.0
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 2.2e-121 439.5 327 71.3
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 2.9e-121 439.1 323 69.0
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.5e-120 436.0 322 68.6
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 2.5e-120 436.0 324 70.4
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 5.5e-120 434.9 325 70.2
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 1.6e-119 433.3 322 70.2
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 2.7e-119 432.6 269 77.7
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 3.6e-119 432.2 323 70.6
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 3.0e-118 429.1 320 70.0
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 6.7e-118 427.9 320 70.0
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 8.8e-118 427.6 325 70.2
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.6e-117 426.0 325 68.0
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 3.3e-117 425.6 323 67.2
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 4.4e-117 425.2 323 69.7
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 1.3e-116 423.7 322 68.0
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.3e-116 423.7 323 68.4
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 1.7e-116 423.3 323 66.9
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 2.2e-116 422.9 290 71.0
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 2.2e-116 422.9 315 71.4
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 1.4e-115 420.2 323 66.3
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 4.1e-115 418.7 325 68.9
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 4.1e-115 418.7 271 77.9
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 5.3e-115 418.3 309 67.3
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 5.3e-115 418.3 329 68.1
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 5.3e-115 418.3 333 67.3
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 1.2e-114 417.2 322 67.7
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 2.6e-114 416.0 321 67.9
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 3.4e-114 415.6 322 66.8
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 5.9e-114 414.8 329 67.8
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.7e-113 413.3 323 65.3
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 8.5e-113 411.0 254 80.3
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 1.1e-112 410.6 325 65.2
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 3.2e-112 409.1 254 79.9
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 9.4e-112 407.5 272 73.9
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 1.2e-111 407.1 324 64.8
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 1.2e-111 407.1 345 64.3
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 3.6e-111 405.6 279 70.3
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 9.7e-109 397.5 363 63.1
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 2.8e-108 396.0 323 65.0
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 3.7e-108 395.6 326 62.9
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 1.2e-106 390.6 322 64.3
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 4.5e-106 388.7 302 65.2
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 5.9e-106 388.3 286 69.2
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 5.9e-106 388.3 268 74.3
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 1.9e-104 383.3 303 64.4
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 4.2e-104 382.1 264 71.6
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 5.5e-104 381.7 237 80.6
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 3.6e-103 379.0 273 70.3
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 3.6e-103 379.0 347 59.1
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 1.0e-102 377.5 308 63.3
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 1.8e-102 376.7 300 65.7
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 4.0e-102 375.6 270 69.6
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 4.0e-102 375.6 273 69.2
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.2e-98 364.0 236 74.6
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 7.7e-98 361.3 237 77.2
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 1.3e-97 360.5 325 60.9
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 2.9e-97 359.4 250 70.0
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 3.8e-97 359.0 234 73.5
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 1.9e-96 356.7 276 64.1
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.2e-95 354.0 212 82.1
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 4.7e-95 352.1 271 66.1
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 7.5e-93 344.7 302 60.3
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 2.8e-92 342.8 398 49.7
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 1.1e-91 340.9 278 64.4
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 4.1e-91 339.0 283 66.4
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.0e-89 334.3 212 76.4
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 3.6e-87 325.9 269 62.8
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 1.4e-78 297.4 313 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 1.8e-78 297.0 298 52.7
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.0e-77 293.5 220 65.0
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 2.5e-72 276.6 243 57.2
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 1.4e-70 270.8 290 50.3
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 1.5e-69 267.3 249 59.8
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 1.2e-61 241.1 256 49.6
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.7e-60 237.3 148 76.4
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 4.9e-52 209.1 268 43.7
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.1e-47 193.7 129 71.3
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 1.7e-41 174.1 105 78.1
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 8.4e-36 155.2 88 90.9
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.4e-35 153.7 88 90.9
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.6e-31 141.0 81 90.1
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 8.2e-23 112.1 74 74.3
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 3.8e-20 103.2 64 76.6
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 5.5e-19 99.4 65 72.3
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 3.5e-18 96.7 260 29.6
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 3.0e-09 67.0 36 83.3
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 8.8e-09 65.5 35 85.7
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 6.3e-07 59.3 95 45.3
Aa31LG8G11430 Aethionema arabicum HOM05D002105 ORTHO05D001271 6.9e-06 55.8 76 43.4


User provided reference genes

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