Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.8e-61 238.4 118 100.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 7.8e-32 140.6 86 74.4
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.5e-30 136.3 81 79.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.9e-30 136.0 81 76.5
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.6e-30 134.4 81 75.3
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.2e-29 133.3 81 82.7
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 2.1e-29 132.5 88 73.9
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.4e-28 129.8 81 74.1
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.8e-28 129.4 81 72.8
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.8e-28 129.4 81 74.1
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.8e-28 129.4 79 72.2
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 3.1e-28 128.6 81 76.5
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 4.0e-28 128.3 79 72.2
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 5.2e-28 127.9 81 71.6
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 6.9e-28 127.5 81 71.6
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 8.9e-28 127.1 81 70.4
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.5e-27 126.3 81 71.6
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.5e-27 126.3 89 68.5
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.0e-27 125.9 86 68.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 2.0e-27 125.9 81 74.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-27 125.9 81 71.6
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.6e-27 125.6 81 71.6
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.4e-27 125.2 81 70.4
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 3.4e-27 125.2 81 71.6
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 4.4e-27 124.8 81 76.5
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.4e-27 124.8 81 76.5
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.4e-27 124.8 81 76.5
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 4.4e-27 124.8 81 70.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 7.6e-27 124.0 81 71.6
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 7.6e-27 124.0 81 70.4
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 7.6e-27 124.0 81 70.4
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.3e-26 123.2 81 71.6
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.3e-26 123.2 81 70.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.3e-26 123.2 83 71.1
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.7e-26 122.9 81 71.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.7e-26 122.9 76 75.0
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.7e-26 122.9 81 71.6
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.7e-26 122.9 108 55.6
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 2.9e-26 122.1 81 69.1
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 2.9e-26 122.1 83 72.3
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 4.9e-26 121.3 82 72.0
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 6.4e-26 120.9 72 77.8
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 8.4e-26 120.6 84 65.5
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 8.4e-26 120.6 81 67.9
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-25 120.2 72 77.8
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-25 119.8 81 75.3
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.4e-25 119.0 79 67.1
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.4e-25 119.0 85 64.7
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.2e-25 118.6 72 76.4
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 3.2e-25 118.6 81 69.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 7.1e-25 117.5 81 67.9
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 9.3e-25 117.1 90 68.9
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.1e-24 115.9 86 64.0
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.7e-24 115.5 74 75.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 3.5e-24 115.2 63 79.4
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.5e-24 115.2 81 66.7
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 6.0e-24 114.4 81 65.4
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.8e-24 114.0 81 66.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 7.8e-24 114.0 70 74.3
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.0e-23 113.6 110 55.5
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.3e-23 113.2 81 65.4
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.9e-23 111.7 81 65.4
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 3.9e-23 111.7 81 65.4
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.9e-23 111.7 81 65.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 6.6e-23 110.9 81 66.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 6.6e-23 110.9 81 60.5
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 6.6e-23 110.9 79 64.6
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 8.7e-23 110.5 70 74.3
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 8.7e-23 110.5 96 57.3
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.9e-22 109.4 66 77.3
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.3e-22 108.6 81 65.4
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.3e-22 108.6 81 64.2
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 3.3e-22 108.6 81 64.2
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 4.3e-22 108.2 81 63.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 4.3e-22 108.2 82 61.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.3e-22 108.2 91 59.3
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 7.3e-22 107.5 66 74.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 7.3e-22 107.5 83 63.9
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 9.6e-22 107.1 74 71.6
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.3e-21 106.7 73 65.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.3e-21 106.7 73 65.8
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.3e-21 106.7 81 63.0
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.3e-21 106.7 81 63.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.1e-21 105.9 61 75.4
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.1e-21 105.9 56 76.8
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 3.6e-21 105.1 79 64.6
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 3.6e-21 105.1 79 60.8
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.8e-21 104.8 81 59.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 6.2e-21 104.4 50 90.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 6.2e-21 104.4 73 68.5
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 6.2e-21 104.4 61 73.8
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 6.2e-21 104.4 59 74.6
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 8.1e-21 104.0 81 60.5
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.1e-20 103.6 50 88.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.1e-20 103.6 50 88.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-20 103.6 55 85.5
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.4e-20 103.2 79 63.3
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.4e-20 103.2 66 74.2
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.8e-20 102.8 64 70.3
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.8e-20 102.8 50 88.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.8e-20 102.8 50 88.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.4e-20 102.4 79 59.5
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 4.0e-20 101.7 58 75.9
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 4.0e-20 101.7 79 60.8
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.0e-20 101.7 79 59.5
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 4.0e-20 101.7 69 65.2
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 5.3e-20 101.3 82 58.5
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 6.9e-20 100.9 50 86.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 6.9e-20 100.9 61 68.9
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 9.0e-20 100.5 62 69.4
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 9.0e-20 100.5 55 78.2
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 9.0e-20 100.5 50 86.0
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 9.0e-20 100.5 81 61.7
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.2e-19 100.1 81 61.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.2e-19 100.1 80 62.5
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.5e-19 99.8 81 61.7
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.5e-19 99.8 78 66.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.0e-19 99.4 81 63.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.0e-19 99.4 81 60.5
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 2.6e-19 99.0 63 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 2.6e-19 99.0 63 66.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.5e-19 98.2 69 68.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 4.5e-19 98.2 82 58.5
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.5e-19 98.2 50 84.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.8e-19 97.8 81 61.7
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 5.8e-19 97.8 46 91.3
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 5.8e-19 97.8 46 91.3
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 5.8e-19 97.8 46 91.3
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 5.8e-19 97.8 70 70.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 7.6e-19 97.4 81 59.3
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 7.6e-19 97.4 81 59.3
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 9.9e-19 97.1 75 66.7
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.3e-18 96.7 81 61.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.3e-18 96.7 81 61.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.3e-18 96.7 81 61.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.3e-18 96.7 81 63.0
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.8e-18 95.1 46 87.0
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 4.9e-18 94.7 81 55.6
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 6.4e-18 94.4 46 87.0
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 6.4e-18 94.4 46 87.0
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.4e-18 94.0 49 79.6
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.4e-18 94.0 67 64.2
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.9e-17 92.8 74 59.5
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.4e-17 92.4 72 62.5
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.2e-16 90.1 47 74.5
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.1e-16 89.4 82 57.3
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.6e-16 88.2 48 75.0
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 4.6e-16 88.2 64 59.4
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 5.1e-15 84.7 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 6.2e-13 77.8 56 62.5
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 3.1e-12 75.5 69 56.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 9.0e-12 73.9 54 66.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.9e-10 68.9 50 64.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 2.1e-08 62.8 54 63.0


User provided reference genes

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