Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.0e-108 396.7 204 100.0
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.2e-58 229.6 119 100.0
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.1e-30 137.5 200 50.0
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.1e-30 137.5 189 52.4
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.5e-30 137.1 189 52.4
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.3e-30 136.0 185 50.3
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.3e-30 135.6 188 47.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.8e-29 132.9 195 50.3
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 4.8e-29 132.1 191 47.6
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 8.2e-29 131.3 193 49.2
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 2.4e-28 129.8 187 50.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.3e-28 128.6 204 43.1
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 6.9e-28 128.3 200 46.5
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.5e-27 127.1 189 45.5
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.5e-27 127.1 184 46.2
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.9e-27 125.2 193 47.7
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.3e-26 124.0 200 43.0
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.7e-26 123.6 187 49.7
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 2.9e-26 122.9 192 47.9
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.8e-26 122.5 197 47.2
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 6.5e-26 121.7 184 46.2
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 8.5e-26 121.3 214 43.0
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.1e-25 120.9 212 47.2
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.1e-25 120.9 184 43.5
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 1.1e-25 120.9 190 46.3
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.4e-25 120.6 185 45.4
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 2.5e-25 119.8 190 48.4
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.2e-25 119.4 204 41.7
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 7.2e-25 118.2 188 47.9
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 7.2e-25 118.2 186 46.8
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.1e-24 116.7 187 46.0
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.7e-24 116.3 185 45.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.6e-24 115.9 192 44.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 7.9e-24 114.8 183 44.8
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.8e-23 113.6 191 46.6
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.9e-23 112.5 195 44.6
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.9e-23 112.5 196 44.4
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 3.9e-23 112.5 187 45.5
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 5.2e-23 112.1 186 43.0
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 5.2e-23 112.1 185 43.2
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 6.7e-23 111.7 186 46.2
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.8e-23 111.3 197 44.2
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.5e-22 110.5 192 44.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-22 110.5 185 42.7
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.0e-22 110.2 197 43.1
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.6e-22 109.8 185 44.3
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.6e-22 109.8 184 45.7
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.4e-22 109.0 196 43.9
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.7e-22 108.6 203 40.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.3e-21 107.5 196 43.9
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.3e-21 107.5 197 41.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.3e-21 107.5 193 45.1
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.7e-21 107.1 195 43.1
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-21 106.7 197 41.6
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.8e-21 106.3 188 47.9
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 2.8e-21 106.3 195 45.6
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 4.8e-21 105.5 193 47.2
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 4.8e-21 105.5 195 42.1
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.8e-21 105.5 187 46.0
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 4.8e-21 105.5 195 41.5
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.1e-20 104.4 190 44.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.4e-20 104.0 193 44.6
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 4.1e-20 102.4 192 44.3
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 4.1e-20 102.4 193 42.0
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.2e-19 100.9 192 46.4
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.2e-19 100.9 186 39.2
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.6e-19 99.8 194 41.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.6e-19 99.8 197 40.1
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 7.7e-19 98.2 195 42.1
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 7.7e-19 98.2 218 37.2
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.2e-18 96.7 193 40.4
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.2e-18 96.7 215 43.7
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.2e-18 96.7 185 41.6
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.8e-18 95.9 191 41.9
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.8e-18 95.9 203 38.9
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 8.5e-18 94.7 192 41.7
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 1.1e-17 94.4 186 41.4
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.9e-17 93.6 121 52.1
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 5.5e-17 92.0 185 42.2
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 7.2e-17 91.7 190 42.1
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 9.4e-17 91.3 185 40.0
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.2e-16 90.9 188 41.0
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.6e-16 90.5 191 43.5
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.6e-16 90.5 191 43.5
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.6e-16 90.5 185 39.5
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.1e-16 90.1 187 41.2
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.7e-16 89.7 185 39.5
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.7e-16 89.7 185 39.5
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 2.7e-16 89.7 192 39.6
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.6e-16 89.4 191 42.9
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 3.6e-16 89.4 191 42.9
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.0e-15 87.8 193 42.5
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.0e-15 87.8 195 41.0
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 1.8e-15 87.0 187 41.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.8e-15 87.0 191 42.9
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 1.8e-15 87.0 149 44.3
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 2.3e-15 86.7 187 41.2
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 2.3e-15 86.7 190 36.8
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 2.3e-15 86.7 195 41.0
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 3.0e-15 86.3 188 43.6
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 3.0e-15 86.3 185 43.2
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 3.0e-15 86.3 196 40.8
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 6.7e-15 85.1 185 36.2
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 6.7e-15 85.1 199 36.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.0e-14 83.6 190 37.4
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 2.0e-14 83.6 194 37.6
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 2.6e-14 83.2 187 41.2
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 2.6e-14 83.2 197 35.5
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.3e-14 82.8 183 39.3
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.3e-14 82.8 191 34.6
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.7e-14 81.3 196 36.7
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 9.7e-14 81.3 196 36.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.3e-13 80.9 192 39.6
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 4.8e-13 79.0 182 37.4
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 6.3e-13 78.6 189 39.7
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.1e-12 77.8 189 36.5
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 3.1e-12 76.3 183 39.3
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.1e-12 76.3 187 37.4
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 4.1e-12 75.9 195 35.9
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 5.3e-12 75.5 189 38.1
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 5.3e-12 75.5 118 45.8
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 7.0e-12 75.1 203 33.5
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 2.0e-11 73.6 138 41.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.0e-11 73.6 197 36.5
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.7e-11 73.2 186 38.7
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.7e-11 71.6 189 33.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.7e-10 70.5 184 34.2
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 3.8e-10 69.3 92 52.2
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 5.0e-10 68.9 125 40.8
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 6.5e-10 68.6 189 30.2
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 8.5e-10 68.2 189 33.9
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.5e-09 67.4 124 48.4
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.5e-09 66.6 195 35.4
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.5e-09 65.5 184 34.2
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.2e-08 64.3 192 33.3
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 3.6e-08 62.8 193 31.1
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 4.7e-08 62.4 201 31.3
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 6.1e-08 62.0 200 33.0
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 8.8e-07 58.2 193 30.1
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 1.2e-06 57.8 153 35.3
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.2e-06 57.8 183 30.1
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 2.6e-06 56.6 195 34.4
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 4.4e-06 55.8 108 42.6
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 5.7e-06 55.5 183 33.9
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 7.5e-06 55.1 139 37.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 9.8e-06 54.7 176 30.1


User provided reference genes

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