Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 4.0e-176 621.3 314 100.0
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 1.5e-45 187.6 322 44.4
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 4.3e-45 186.0 345 42.3
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 9.6e-45 184.9 310 44.8
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 9.6e-45 184.9 309 44.7
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.4e-43 181.0 311 44.7
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 4.0e-43 179.5 328 41.8
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.0e-43 178.3 345 40.6
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 4.5e-42 176.0 356 41.3
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 2.5e-37 160.2 363 38.8
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 9.6e-37 158.3 340 39.7
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.1e-35 154.8 321 37.4
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 9.0e-35 151.8 322 39.4
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 5.9e-34 149.1 303 38.9
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 7.6e-34 148.7 322 37.6
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.0e-33 148.3 344 40.1
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.2e-33 147.1 321 38.3
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 5.0e-33 146.0 304 36.2
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 2.5e-32 143.7 328 39.0
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 7.2e-32 142.1 341 35.2
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 9.3e-32 141.7 314 37.6
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 2.1e-31 140.6 326 37.4
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 3.6e-31 139.8 330 33.9
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 4.6e-31 139.4 326 35.3
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 4.6e-31 139.4 315 38.4
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.8e-30 137.5 327 36.4
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 2.3e-30 137.1 309 38.8
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 3.0e-30 136.7 328 36.6
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 3.9e-30 136.3 351 36.2
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 3.9e-30 136.3 338 35.2
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 3.9e-30 136.3 358 39.4
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 5.1e-30 136.0 311 37.0
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 1.9e-29 134.0 326 35.6
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.5e-29 133.7 318 38.1
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 2.8e-28 130.2 313 35.1
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 3.7e-28 129.8 330 34.8
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 6.3e-28 129.0 329 36.2
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 8.2e-28 128.6 326 34.0
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 8.2e-28 128.6 316 37.3
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 3.1e-27 126.7 349 33.5
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.1e-27 126.7 353 33.1
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 4.1e-27 126.3 330 35.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 9.0e-27 125.2 320 36.2
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.5e-26 124.4 331 36.3
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 2.6e-26 123.6 376 32.2
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 5.9e-26 122.5 330 34.8
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 5.9e-26 122.5 330 34.8
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.0e-25 121.7 329 36.2
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 3.8e-25 119.8 330 32.4
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 6.5e-25 119.0 355 32.1
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 8.5e-25 118.6 330 36.1
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 8.5e-25 118.6 331 35.0
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 1.9e-24 117.5 330 32.4
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 1.6e-23 114.4 319 34.2
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 6.1e-23 112.5 306 32.4
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 1.0e-22 111.7 333 34.2
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 1.8e-22 110.9 305 34.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 3.0e-22 110.2 308 32.5
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 5.1e-22 109.4 300 33.3
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.1e-21 108.2 246 37.8
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 2.0e-21 107.5 335 30.1
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 5.7e-21 105.9 325 34.8
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 5.7e-21 105.9 316 32.9
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 5.7e-21 105.9 296 33.8
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 7.4e-21 105.5 186 41.9
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 1.3e-20 104.8 247 36.0
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 4.8e-20 102.8 364 29.1
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 4.8e-20 102.8 243 37.0
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.1e-19 101.7 343 30.6
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 9.1e-19 98.6 318 32.1
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.2e-18 98.2 343 30.6
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 1.2e-18 98.2 356 29.8
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.2e-18 98.2 198 37.9
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 3.4e-18 96.7 347 31.1
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 4.5e-18 96.3 264 33.0
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 5.9e-18 95.9 273 32.6
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.0e-17 95.1 392 27.6
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.2e-17 94.0 366 28.1
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 2.2e-17 94.0 265 33.6
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 2.9e-17 93.6 261 35.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.8e-17 93.2 304 30.9
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 3.8e-17 93.2 188 38.8
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 1.1e-16 91.7 355 29.9
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 9.4e-16 88.6 336 33.0
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.2e-15 88.2 270 34.4
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.2e-15 88.2 318 30.2
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 1.0e-14 85.1 294 29.3
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.8e-14 84.3 266 32.3
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 3.9e-14 83.2 269 33.1
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 3.9e-14 83.2 297 31.3
Sc16g0007300 Simmondsia chinensis HOM05D001501 ORTHO05D001329 5.2e-14 82.8 298 31.2
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 1.1e-13 81.6 262 31.7
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 1.1e-13 81.6 158 41.8
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 2.0e-13 80.9 244 31.1
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.0e-13 80.9 323 29.4
AUR62019490 Chenopodium quinoa HOM05D001501 ORTHO05D001329 3.3e-13 80.1 155 40.6
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 4.4e-13 79.7 256 32.4
PSO541G6205 Papaver somniferum HOM05D001501 ORTHO05D001329 5.7e-13 79.3 287 30.7
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 9.7e-13 78.6 263 32.3
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 9.7e-13 78.6 264 32.2
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 9.7e-13 78.6 263 32.3
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 1.3e-12 78.2 264 32.2
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 2.2e-12 77.4 380 27.4
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 3.7e-12 76.6 378 26.5
Aqoxy1G02259 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 4.8e-12 76.3 364 26.9
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 4.8e-12 76.3 263 31.9
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 6.3e-12 75.9 380 27.1
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 1.1e-11 75.1 309 31.1
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 7.0e-11 72.4 264 31.1
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 9.1e-11 72.0 315 31.1
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 9.1e-11 72.0 130 36.9
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 9.1e-11 72.0 130 36.9
Sed0013458 Sechium edule HOM05D001501 ORTHO05D001329 9.1e-11 72.0 237 34.2
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 1.2e-10 71.6 385 25.7
Actinidia18779 Actinidia chinensis HOM05D010484 ORTHO05D001329 1.6e-10 71.2 291 30.6
Sed0026243 Sechium edule HOM05D001501 ORTHO05D001329 1.6e-10 71.2 285 28.4
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 5.9e-10 69.3 310 27.4
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 5.9e-10 69.3 289 26.0
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 7.7e-10 68.9 319 24.8
ECA234G3280 Erigeron canadensis HOM05D016023 ORTHO05D010242 8.5e-09 65.5 313 27.5
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 1.1e-08 65.1 412 25.0
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 1.9e-08 64.3 205 31.7
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 2.5e-08 63.9 415 23.4
unitig_37.g12566 Utricularia gibba HOM05D001501 ORTHO05D001329 8.0e-07 58.9 111 38.7
SMO165G0039 Selaginella moellendorffii HOM05D001501 ORTHO05D001329 1.0e-06 58.5 107 40.2
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 1.4e-06 58.2 292 27.4
AagrBONN_evm.TU.Sc2ySwM_340.359 Anthoceros agrestis HOM05D001501 ORTHO05D001329 3.0e-06 57.0 95 38.9
MELO3C019395.2 Cucumis melo HOM05D001501 ORTHO05D001329 3.0e-06 57.0 188 30.3


User provided reference genes

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