Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 4.0e-224 781.2 409 100.0
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 4.3e-162 575.1 365 83.3
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 3.6e-161 572.0 403 77.4
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 8.1e-161 570.9 410 77.1
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 3.1e-160 568.9 410 76.1
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 3.1e-160 568.9 404 76.7
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.2e-159 567.0 410 76.3
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 7.6e-159 564.3 372 79.6
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 9.9e-159 563.9 410 75.1
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.3e-158 563.5 412 76.2
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.7e-158 563.1 415 74.7
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 3.8e-158 562.0 404 76.5
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 6.4e-158 561.2 374 79.7
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.9e-157 559.7 353 83.0
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 5.4e-157 558.1 404 76.0
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 1.2e-156 557.0 361 81.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 6.0e-156 554.7 410 74.9
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 6.0e-156 554.7 410 74.9
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 6.0e-156 554.7 404 76.0
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 6.0e-156 554.7 412 75.5
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.0e-155 553.9 414 75.6
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.3e-155 553.5 403 76.9
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 1.3e-155 553.5 410 74.6
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 3.0e-155 552.4 410 74.1
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.1e-154 550.4 411 73.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.1e-154 550.4 413 73.1
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 1.5e-154 550.1 413 74.8
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.9e-154 549.7 360 78.6
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 5.6e-154 548.1 366 79.0
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 1.3e-153 547.0 410 73.9
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 1.3e-153 547.0 360 78.6
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 4.8e-153 545.0 366 77.0
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.1e-152 543.9 400 74.0
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 1.4e-152 543.5 337 84.3
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 2.4e-152 542.7 386 75.9
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 3.1e-152 542.3 410 71.7
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 4.5e-151 538.5 366 76.0
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 4.5e-151 538.5 411 72.0
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 5.8e-151 538.1 407 73.2
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.7e-150 536.6 393 74.0
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 3.8e-150 535.4 363 78.2
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.1e-149 533.9 418 70.1
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.4e-149 533.5 319 86.2
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 2.5e-149 532.7 357 77.3
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 4.6e-148 528.5 359 78.6
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 6.0e-148 528.1 413 71.7
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 6.0e-148 528.1 413 71.7
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 7.9e-148 527.7 362 76.2
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 3.0e-147 525.8 336 80.7
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 3.0e-147 525.8 348 78.7
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.9e-147 525.4 410 71.5
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 8.7e-147 524.2 411 71.0
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-146 523.9 410 71.2
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 1.5e-146 523.5 370 74.1
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 7.4e-146 521.2 444 66.9
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 3.7e-145 518.8 370 75.1
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 4.8e-145 518.5 353 77.6
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.1e-144 517.3 419 70.4
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 4.0e-144 515.4 368 73.9
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 5.3e-144 515.0 414 70.5
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 5.3e-144 515.0 363 76.0
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.0e-142 510.8 368 73.4
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 2.2e-142 509.6 384 72.9
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.2e-142 509.6 404 71.8
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 2.2e-142 509.6 368 73.1
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 6.5e-142 508.1 402 69.4
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 6.5e-142 508.1 407 70.3
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.1e-141 507.3 390 70.8
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 2.5e-141 506.1 365 74.2
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 5.5e-141 505.0 363 73.6
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 1.2e-140 503.8 402 69.7
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.9e-138 496.5 406 70.4
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 4.3e-138 495.4 374 72.7
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 5.7e-138 495.0 387 69.5
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 9.7e-138 494.2 354 75.1
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 6.9e-136 488.0 387 69.5
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 1.2e-135 487.3 411 67.4
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 3.8e-134 482.3 368 71.7
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 8.5e-134 481.1 398 68.6
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 2.5e-133 479.6 400 67.8
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.0e-131 474.2 319 75.5
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 5.1e-131 471.9 295 82.4
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.5e-130 469.5 355 68.2
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 2.2e-129 466.5 343 73.5
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 2.8e-129 466.1 318 74.5
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 6.3e-129 464.9 393 65.9
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 2.4e-128 463.0 285 82.5
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.2e-127 460.7 318 73.3
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 2.6e-127 459.5 401 62.8
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 9.4e-125 451.1 308 78.9
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 1.5e-122 443.7 328 71.6
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.3e-118 430.6 459 56.6
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 6.3e-113 411.8 285 74.0
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 2.0e-111 406.8 382 59.7
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.1e-101 374.4 407 53.1
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.1e-100 370.2 239 79.1
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.3e-86 324.3 429 50.1
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.0e-82 310.5 242 71.5
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 3.4e-82 309.7 295 64.1
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.9e-80 303.9 290 59.7
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 4.1e-80 302.8 394 42.6
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.7e-79 300.1 200 74.0
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.0e-78 298.1 282 63.1
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 5.0e-78 295.8 319 49.2
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 2.6e-74 283.5 338 45.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 9.8e-74 281.6 900 29.7
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.9e-72 277.3 466 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 3.0e-70 270.0 236 57.6
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.9e-65 253.4 157 79.6
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.7e-55 220.3 143 80.4
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 4.9e-49 199.5 157 71.3
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 1.1e-45 188.3 124 77.4
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.0e-42 177.6 105 87.6
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.6e-39 166.4 177 55.4
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 4.5e-34 149.8 339 33.0
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.9e-24 117.9 82 73.2
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 2.1e-15 87.8 260 30.4
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.8e-14 84.7 46 89.1
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 1.5e-13 81.6 48 81.2
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 3.3e-13 80.5 49 79.6
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.3e-12 78.6 80 53.8
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 2.8e-12 77.4 275 29.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 7.2e-08 62.8 73 50.7
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 3.9e-06 57.0 58 53.4


User provided reference genes

Program Settings