Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 2.2e-53 212.6 158 100.0
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 1.0e-18 97.4 82 62.2
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 3.6e-16 89.0 57 78.9
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.1e-15 85.9 58 74.1
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 5.2e-15 85.1 57 73.7
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.2e-14 84.0 56 71.4
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.2e-14 84.0 52 73.1
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 1.2e-14 84.0 90 53.3
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.5e-14 83.6 82 58.5
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 2.0e-14 83.2 62 72.6
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.4e-14 82.0 82 58.5
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 4.4e-14 82.0 158 57.6
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.5e-14 81.3 78 59.0
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 7.5e-14 81.3 78 61.5
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 7.5e-14 81.3 168 54.2
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 9.8e-14 80.9 97 51.5
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.3e-13 80.5 172 45.3
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.7e-13 80.1 57 70.2
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.2e-13 79.7 84 58.3
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.9e-13 79.3 159 59.7
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.9e-13 79.3 63 63.5
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 3.7e-13 79.0 87 55.2
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 4.9e-13 78.6 77 55.8
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 4.9e-13 78.6 157 64.3
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 4.9e-13 78.6 156 49.4
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 6.4e-13 78.2 57 68.4
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 8.3e-13 77.8 75 61.3
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.1e-12 77.4 58 65.5
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.4e-12 77.0 76 63.2
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.4e-12 77.0 46 78.3
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.9e-12 76.6 57 66.7
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.4e-12 76.3 157 63.7
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 2.4e-12 76.3 76 56.6
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 3.2e-12 75.9 80 53.8
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 4.1e-12 75.5 46 78.3
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 5.4e-12 75.1 58 63.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.4e-12 75.1 172 43.0
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 7.1e-12 74.7 76 61.8
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 9.2e-12 74.3 57 66.7
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 1.6e-11 73.6 57 66.7
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 2.1e-11 73.2 78 55.1
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 3.5e-11 72.4 59 62.7
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 3.5e-11 72.4 58 65.5
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 3.5e-11 72.4 57 64.9
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 6.0e-11 71.6 81 54.3
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 7.8e-11 71.2 47 76.6
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 7.8e-11 71.2 47 76.6
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 7.8e-11 71.2 47 76.6
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 6.6e-10 68.2 77 53.2
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 8.6e-10 67.8 59 55.9
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 8.6e-10 67.8 80 53.8
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.5e-09 67.0 58 60.3
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 1.9e-09 66.6 59 59.3
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 1.9e-09 66.6 83 51.8
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 3.3e-09 65.9 79 49.4
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 4.3e-09 65.5 81 51.9
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 9.5e-09 64.3 53 62.3
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 9.5e-09 64.3 75 54.7
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 1.2e-08 63.9 89 47.2
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.6e-08 63.5 45 68.9
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 1.6e-08 63.5 45 66.7
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 2.8e-08 62.8 82 51.2
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 2.8e-08 62.8 80 48.8
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 3.6e-08 62.4 57 56.1
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 4.7e-08 62.0 58 56.9
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 4.7e-08 62.0 76 44.7
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 6.2e-08 61.6 53 56.6
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 6.2e-08 61.6 53 56.6
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 6.2e-08 61.6 55 58.2
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 8.1e-08 61.2 45 68.9
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.3e-07 59.7 80 51.2
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 3.1e-07 59.3 45 62.2
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 3.1e-07 59.3 45 62.2
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 3.1e-07 59.3 80 43.8
Lalb_Chr19g0135631 Lupinus albus HOM05D007783 ORTHO05D009740 3.1e-07 59.3 61 54.1
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 3.1e-07 59.3 76 55.3
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 8.9e-07 57.8 45 62.2
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 8.9e-07 57.8 46 60.9
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 8.9e-07 57.8 50 58.0
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 1.5e-06 57.0 82 48.8
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 1.5e-06 57.0 82 48.8
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 4.4e-06 55.5 55 54.5


User provided reference genes

Program Settings