Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.22 Carica papaya HOM05D001166 ORTHO05D000992 4.1e-35 151.0 84 100.0
CARHR082250 Cardamine hirsuta HOM05D001166 ORTHO05D000992 2.1e-18 95.5 84 69.0
Manes.13G057700 Manihot esculenta HOM05D001166 ORTHO05D000992 4.3e-16 87.8 89 66.3
TWI36G0272 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 6.8e-14 80.5 84 61.9
TWI36G0628 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 6.8e-14 80.5 84 61.9
BraA03t12712Z Brassica rapa HOM05D001166 ORTHO05D000992 8.9e-14 80.1 83 60.2
TWI18G0984 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 8.9e-14 80.1 85 62.4
BcaC01g04276 Brassica carinata HOM05D001166 ORTHO05D000992 1.5e-13 79.3 84 61.9
C03p42950 Brassica napus HOM05D001166 ORTHO05D000992 1.5e-13 79.3 84 61.9
BolC3t16563H Brassica oleracea HOM05D001166 ORTHO05D000992 1.5e-13 79.3 84 61.9
Duzib138G0233 Durio zibethinus HOM05D001166 ORTHO05D000992 2.6e-13 78.6 83 57.8
Atru.chr6.3487 Acer truncatum HOM05D001166 ORTHO05D000992 7.6e-13 77.0 83 57.8
Ciclev10016354m.g Citrus clementina HOM05D001166 ORTHO05D000992 2.9e-12 75.1 85 60.0
Carub.0003s0712 Capsella rubella HOM05D001166 ORTHO05D000992 1.1e-11 73.2 84 58.3
AT3G07565 Arabidopsis thaliana HOM05D001166 ORTHO05D000992 1.9e-11 72.4 84 58.3
Sp3g06490 Schrenkiella parvula HOM05D001166 ORTHO05D000992 4.1e-11 71.2 84 58.3
AL3G18910 Arabidopsis lyrata HOM05D001166 ORTHO05D000992 5.4e-11 70.9 84 56.0
Gohir.D11G151500 Gossypium hirsutum HOM05D001166 ORTHO05D000992 9.2e-11 70.1 83 57.8
Gorai.007G162200 Gossypium raimondii HOM05D001166 ORTHO05D000992 9.2e-11 70.1 83 57.8
C05p59750 Brassica napus HOM05D001166 ORTHO05D000992 2.1e-10 68.9 85 56.5
Gohir.A11G145100 Gossypium hirsutum HOM05D001166 ORTHO05D000992 2.7e-10 68.6 83 55.4
A05p40640 Brassica napus HOM05D001166 ORTHO05D000992 2.3e-09 65.5 87 54.0
BraA05t22795Z Brassica rapa HOM05D001166 ORTHO05D000992 2.3e-09 65.5 87 54.0
Gohir.A07G162100 Gossypium hirsutum HOM05D001166 ORTHO05D000992 2.3e-09 65.5 83 53.0
Gohir.D07G168600 Gossypium hirsutum HOM05D001166 ORTHO05D000992 2.3e-09 65.5 83 53.0
Gorai.N001000 Gossypium raimondii HOM05D001166 ORTHO05D000992 2.3e-09 65.5 83 53.0
BolC5t34629H Brassica oleracea HOM05D001166 ORTHO05D000992 3.0e-09 65.1 85 55.3
BolC1t05545H Brassica oleracea HOM05D001166 ORTHO05D000992 5.1e-09 64.3 84 54.8
Dinv28778 Davidia involucrata HOM05D001166 ORTHO05D000992 5.1e-09 64.3 83 53.0
Dinv07641 Davidia involucrata HOM05D001166 ORTHO05D000992 1.1e-08 63.2 83 53.0
Hma1.2p1_0161F.1_g071800 Hydrangea macrophylla HOM05D001166 ORTHO05D000992 1.1e-08 63.2 83 50.6
Duzib211G0070 Durio zibethinus HOM05D001166 ORTHO05D000992 1.5e-08 62.8 83 50.6
Actinidia11653 Actinidia chinensis HOM05D001166 ORTHO05D000992 1.9e-08 62.4 83 51.8
COL.COLO4_04514 Corchorus olitorius HOM05D001166 ORTHO05D000992 1.9e-08 62.4 83 49.4
Thhalv10021333m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 1.9e-08 62.4 83 53.0
Atru.chr8.37 Acer truncatum HOM05D001720 ORTHO05D001813 2.5e-08 62.0 75 53.3
Gohir.D08G058600 Gossypium hirsutum HOM05D001166 ORTHO05D000992 3.3e-08 61.6 83 48.2
Thecc.01G204900 Theobroma cacao HOM05D001166 ORTHO05D000992 4.3e-08 61.2 83 50.6
BraA01t04375Z Brassica rapa HOM05D001166 ORTHO05D000992 5.6e-08 60.8 86 54.7
A03p35340 Brassica napus HOM05D001166 ORTHO05D000992 7.3e-08 60.5 83 50.6
BcaB04g21286 Brassica carinata HOM05D001166 ORTHO05D000992 8.1e-07 57.0 82 50.0
Nn7g37565 Nelumbo nucifera HOM05D001166 ORTHO05D000992 1.4e-06 56.2 83 47.0
Nitab4.5_0001015g0030 Nicotiana tabacum HOM05D001166 ORTHO05D000992 1.4e-06 56.2 83 48.2
THA.LOC104802640 Tarenaya hassleriana HOM05D001166 ORTHO05D000992 1.4e-06 56.2 85 49.4
Potri.014G197300 Populus trichocarpa HOM05D001166 ORTHO05D000992 1.8e-06 55.8 71 47.9
vmacro14673 Vaccinium macrocarpon HOM05D001166 ORTHO05D000992 1.8e-06 55.8 83 47.0
Gorai.004G060500 Gossypium raimondii HOM05D001166 ORTHO05D000992 2.4e-06 55.5 83 44.6
THA.LOC104822454 Tarenaya hassleriana HOM05D001166 ORTHO05D000992 3.1e-06 55.1 33 75.8
CSS0018593 Camellia sinensis var. sinensis HOM05D001166 ORTHO05D000992 4.0e-06 54.7 83 51.8
EL10Ac3g06023 Beta vulgaris HOM05D001166 ORTHO05D000992 5.2e-06 54.3 83 47.0
Nitab4.5_0007648g0020 Nicotiana tabacum HOM05D001166 ORTHO05D000992 5.2e-06 54.3 83 48.2
BcaC05g29551 Brassica carinata HOM05D001166 ORTHO05D000992 9.0e-06 53.5 83 45.8


User provided reference genes

Program Settings