Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 9.6e-30 133.7 118 100.0
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 5.6e-14 81.3 61 70.5
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.3e-13 80.1 72 58.3
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.8e-13 78.2 56 73.2
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.8e-13 78.2 56 73.2
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 4.8e-13 78.2 56 73.2
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 6.2e-13 77.8 56 71.4
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 8.1e-13 77.4 58 60.3
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.1e-12 77.0 58 69.0
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 1.8e-12 76.3 68 60.3
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 2.4e-12 75.9 58 69.0
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 4.0e-12 75.1 58 67.2
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 4.0e-12 75.1 53 71.7
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 5.3e-12 74.7 57 68.4
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.2e-11 73.6 57 63.2
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.2e-11 73.6 66 59.1
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.5e-11 73.2 72 52.8
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 2.0e-11 72.8 66 59.1
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 2.6e-11 72.4 62 62.9
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 3.4e-11 72.0 65 61.5
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.5e-11 71.6 66 57.6
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 9.9e-11 70.5 52 61.5
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 2.2e-10 69.3 53 71.7
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 2.9e-10 68.9 51 64.7
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.8e-10 68.6 69 50.7
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.8e-10 68.6 69 50.7
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 3.8e-10 68.6 67 55.2
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 4.9e-10 68.2 59 54.2
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 4.9e-10 68.2 58 58.6
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 6.4e-10 67.8 56 60.7
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 6.4e-10 67.8 69 50.7
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 1.1e-09 67.0 74 52.7
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 1.9e-09 66.2 54 55.6
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 2.4e-09 65.9 54 55.6
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 4.2e-09 65.1 52 65.4
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 5.5e-09 64.7 43 72.1
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 5.5e-09 64.7 53 62.3
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 9.3e-09 63.9 53 60.4
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 9.3e-09 63.9 52 67.3
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 1.2e-08 63.5 55 61.8
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 1.6e-08 63.2 58 55.2
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 3.5e-08 62.0 56 58.9
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 4.6e-08 61.6 52 67.3
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 4.6e-08 61.6 53 58.5
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 4.6e-08 61.6 60 55.0
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 4.6e-08 61.6 57 59.6
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 6.0e-08 61.2 53 62.3
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 7.9e-08 60.8 58 56.9
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 7.9e-08 60.8 58 56.9
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 7.9e-08 60.8 53 56.6
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.8e-07 59.7 53 58.5
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.3e-07 59.3 53 56.6
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 2.3e-07 59.3 99 64.6
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 3.0e-07 58.9 58 63.8
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 3.9e-07 58.5 56 57.1
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 3.9e-07 58.5 40 70.0
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 5.1e-07 58.2 56 55.4
CsaV3_7G025680 Cucumis sativus L. HOM05D007427 ORTHO05D006413 6.7e-07 57.8 50 58.0
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 8.7e-07 57.4 51 62.7
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 1.1e-06 57.0 58 53.4
TWI23G0386 Tripterygium wilfordii HOM05D064064 ORTHO05D006413 1.1e-06 57.0 44 61.4
Duzib138G1712 Durio zibethinus HOM05D007427 ORTHO05D006413 1.5e-06 56.6 35 85.7
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 1.5e-06 56.6 59 52.5
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 1.9e-06 56.2 57 56.1
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 1.9e-06 56.2 54 57.4
PSO063G2436 Papaver somniferum HOM05D007427 ORTHO05D006413 1.9e-06 56.2 58 53.4
Sed0024987 Sechium edule HOM05D040734 ORTHO05D006413 1.9e-06 56.2 50 56.0
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 2.5e-06 55.8 52 59.6
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 2.5e-06 55.8 55 56.4
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 4.3e-06 55.1 59 55.9
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 4.3e-06 55.1 58 51.7
BcaNung00447 Brassica carinata HOM05D008344 ORTHO05D006413 5.6e-06 54.7 59 54.2
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 5.6e-06 54.7 54 44.4
SalBow4G2254 Salvia bowleyana HOM05D007427 ORTHO05D006413 5.6e-06 54.7 54 53.7
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 9.6e-06 53.9 58 51.7
A03p58660 Brassica napus HOM05D008344 ORTHO05D006413 9.6e-06 53.9 59 55.9
BraA03t14927Z Brassica rapa HOM05D008344 ORTHO05D006413 9.6e-06 53.9 59 55.9
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 9.6e-06 53.9 57 47.4


User provided reference genes

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