Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc791.3 Carica papaya HOM05D003697 ORTHO05D005452 1.2e-52 209.5 104 100.0
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 1.9e-13 79.3 79 57.0
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 1.9e-13 79.3 79 57.0
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 3.9e-11 71.6 84 54.8
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 3.3e-10 68.6 79 51.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 4.3e-10 68.2 79 54.4
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 9.7e-10 67.0 81 51.9
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 9.7e-10 67.0 79 53.2
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 1.3e-09 66.6 83 53.0
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.3e-09 66.6 79 53.2
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 1.3e-09 66.6 79 53.2
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 1.7e-09 66.2 79 53.2
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 3.7e-09 65.1 83 53.0
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 4.8e-09 64.7 83 53.0
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 6.3e-09 64.3 85 52.9
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 8.2e-09 63.9 84 51.2
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 8.2e-09 63.9 79 50.6
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 1.1e-08 63.5 84 51.2
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 1.1e-08 63.5 79 51.9
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 1.4e-08 63.2 84 51.2
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 1.4e-08 63.2 84 51.2
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 1.4e-08 63.2 79 50.6
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 1.8e-08 62.8 83 51.8
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 1.8e-08 62.8 79 50.6
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 49.4
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 49.4
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 49.4
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 2.4e-08 62.4 79 49.4
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 49.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 50.6
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 50.6
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 2.4e-08 62.4 79 48.1
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 3.1e-08 62.0 79 51.9
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 3.1e-08 62.0 88 52.3
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 3.1e-08 62.0 79 51.9
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 4.1e-08 61.6 79 46.8
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 4.1e-08 61.6 79 49.4
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 4.1e-08 61.6 84 48.8
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 4.1e-08 61.6 84 48.8
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 4.1e-08 61.6 80 51.2
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 4.1e-08 61.6 77 51.9
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 5.3e-08 61.2 80 53.8
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 5.3e-08 61.2 79 50.6
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 5.3e-08 61.2 79 50.6
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 5.3e-08 61.2 80 50.0
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 5.3e-08 61.2 80 50.0
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 6.9e-08 60.8 80 52.5
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 6.9e-08 60.8 79 50.6
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 6.9e-08 60.8 79 48.1
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 9.1e-08 60.5 79 49.4
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 9.1e-08 60.5 81 50.6
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.1e-08 60.5 80 50.0
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 1.2e-07 60.1 57 54.4
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 1.2e-07 60.1 77 49.4
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 1.2e-07 60.1 79 50.6
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 1.2e-07 60.1 79 50.6
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.5e-07 59.7 79 50.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.5e-07 59.7 79 45.6
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 1.5e-07 59.7 79 50.6
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 2.0e-07 59.3 79 50.6
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 2.0e-07 59.3 79 48.1
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.6e-07 58.9 80 48.8
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.6e-07 58.9 79 50.6
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 3.4e-07 58.5 79 49.4
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 3.4e-07 58.5 79 49.4
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 3.4e-07 58.5 79 49.4
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 3.4e-07 58.5 79 49.4
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 3.4e-07 58.5 79 50.6
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 4.5e-07 58.2 81 46.9
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 4.5e-07 58.2 80 48.8
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 4.5e-07 58.2 79 48.1
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 5.9e-07 57.8 79 50.6
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 5.9e-07 57.8 79 49.4
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 5.9e-07 57.8 82 48.8
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 7.7e-07 57.4 79 44.3
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 7.7e-07 57.4 79 44.3
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.0e-06 57.0 79 48.1
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 1.0e-06 57.0 79 48.1
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.0e-06 57.0 54 55.6
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 1.0e-06 57.0 79 45.6
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 1.3e-06 56.6 58 50.0
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 1.7e-06 56.2 79 49.4
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 1.7e-06 56.2 79 48.1
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.7e-06 56.2 79 49.4
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 1.7e-06 56.2 79 49.4
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 1.7e-06 56.2 79 49.4
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-06 55.8 80 47.5
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 2.9e-06 55.5 79 50.6
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 2.9e-06 55.5 79 48.1
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 2.9e-06 55.5 70 52.9
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 3.8e-06 55.1 78 48.7
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 3.8e-06 55.1 80 46.2
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 3.8e-06 55.1 58 51.7
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 3.8e-06 55.1 79 46.8
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 5.0e-06 54.7 73 43.8
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 6.5e-06 54.3 86 43.0
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 6.5e-06 54.3 79 48.1


User provided reference genes

Program Settings