Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 8.5e-265 916.4 441 100.0
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.1e-207 725.7 438 78.8
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.2e-206 721.1 438 79.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.5e-205 719.5 445 78.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.4e-205 718.0 438 78.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.6e-205 717.2 438 77.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.9e-204 715.3 451 76.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.8e-204 714.9 434 78.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.1e-203 713.4 427 79.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.4e-203 712.2 438 77.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.2e-203 711.8 439 77.4
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.2e-203 711.4 438 78.3
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.6e-202 709.5 438 77.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 4.6e-202 708.0 438 77.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.6e-202 708.0 438 77.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 6.6e-201 704.1 438 77.6
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 8.7e-201 703.7 438 77.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.5e-200 703.0 440 76.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.9e-200 702.6 438 76.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.6e-199 699.5 419 78.8
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 6.2e-199 697.6 438 77.9
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-198 696.4 438 76.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 6.9e-198 694.1 438 75.6
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-197 692.6 438 74.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-197 692.6 438 74.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.7e-196 689.5 438 75.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.2e-196 689.1 417 76.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 5.4e-195 684.5 438 74.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 5.4e-195 684.5 438 75.1
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 9.3e-195 683.7 421 77.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.3e-195 683.7 448 73.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.7e-194 682.2 439 72.7
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.5e-194 681.8 429 76.2
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.5e-192 676.4 439 73.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.5e-192 676.4 439 73.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 5.6e-192 674.5 440 72.7
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.3e-192 674.1 438 74.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.8e-191 672.2 455 71.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 6.2e-191 671.0 419 76.4
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.2e-189 666.8 438 73.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 4.9e-188 661.4 438 72.4
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.9e-188 661.4 450 71.8
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.9e-188 661.4 435 72.4
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 6.4e-188 661.0 438 71.9
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.4e-187 659.8 438 72.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.2e-186 656.8 445 71.5
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.5e-186 655.2 407 75.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.9e-186 654.1 421 74.8
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.0e-185 653.7 406 75.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-185 653.3 451 71.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.8e-185 652.9 438 71.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-185 652.5 441 71.9
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.9e-185 651.7 442 72.2
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 8.7e-185 650.6 428 72.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-184 650.2 407 74.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.9e-184 649.4 407 75.2
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.3e-184 648.7 406 74.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 9.6e-184 647.1 407 74.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 9.6e-184 647.1 406 74.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.1e-183 646.0 428 72.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.7e-183 645.2 438 70.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.1e-183 644.0 465 68.0
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-182 643.7 438 70.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-182 641.3 438 70.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.0e-182 640.6 438 71.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 9.0e-182 640.6 396 76.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.2e-178 630.2 439 69.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.6e-178 629.8 433 69.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.7e-178 629.0 427 68.4
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.0e-177 627.1 378 77.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-176 622.9 453 67.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 2.5e-176 622.5 438 67.1
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 7.4e-176 620.9 438 68.3
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.1e-175 619.4 435 69.9
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.4e-174 616.7 439 66.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.0e-174 615.1 439 67.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.9e-174 614.4 438 68.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.6e-173 612.5 438 68.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.6e-173 612.5 438 67.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 4.5e-173 611.7 439 67.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.3e-172 610.1 440 67.3
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.8e-172 608.6 469 67.4
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.5e-171 605.9 453 66.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.2e-171 605.5 440 66.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 7.1e-171 604.4 442 65.4
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 9.3e-171 604.0 440 65.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 9.3e-171 604.0 442 65.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-170 603.2 442 65.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.6e-170 603.2 442 65.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.3e-169 599.4 379 72.8
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 5.1e-169 598.2 442 66.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.5e-168 596.7 370 77.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.5e-168 596.7 475 62.3
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-167 592.0 386 71.2
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.4e-166 590.1 386 73.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 6.9e-166 587.8 442 64.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 9.0e-166 587.4 438 65.3
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.0e-164 583.9 359 77.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.3e-164 583.6 455 64.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 3.2e-163 578.9 382 71.2
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 7.2e-163 577.8 397 71.0
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.6e-162 576.6 428 67.1
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 4.6e-162 575.1 470 61.1
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 6.1e-162 574.7 433 65.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.4e-161 573.5 441 65.5
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.3e-161 572.8 441 65.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.1e-158 563.9 425 64.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.0e-156 557.4 440 60.0
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 6.5e-156 554.7 422 66.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.3e-148 530.4 521 55.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.1e-142 510.8 420 57.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.3e-142 508.4 454 58.8
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.6e-138 495.7 418 56.2
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.4e-137 493.8 396 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.0e-136 490.0 444 54.5
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 9.7e-136 487.6 388 63.4
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-135 486.9 352 67.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.1e-123 447.6 269 77.3
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 9.5e-123 444.5 351 60.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.4e-121 440.7 349 60.2
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.3e-119 434.1 269 75.1
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 4.9e-119 432.2 407 55.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.5e-117 425.6 460 52.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 3.3e-115 419.5 445 50.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.3e-111 404.8 391 55.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.9e-108 396.0 271 72.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 8.0e-106 388.3 334 60.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.3e-99 366.3 354 49.2
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.4e-89 333.6 352 46.6
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.9e-87 326.6 281 60.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-84 317.8 198 77.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.6e-82 310.8 405 41.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-81 307.8 205 70.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-75 287.7 175 78.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.0e-57 225.3 119 83.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.5e-56 224.6 194 55.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 5.8e-56 222.6 184 61.4
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 6.3e-50 202.6 157 64.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-49 201.8 198 59.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-48 198.4 242 50.0
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.0e-47 195.3 239 49.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 4.8e-42 176.4 234 43.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 2.1e-37 161.0 87 82.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.9e-36 156.8 242 43.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.2e-34 151.0 94 75.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-30 137.9 88 71.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-29 134.4 197 42.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.0e-28 130.2 88 70.5
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-22 111.3 60 83.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 7.2e-22 109.4 71 66.2
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 5.7e-19 99.8 70 68.6
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 5.4e-17 93.2 65 63.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.7e-13 80.1 80 55.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.3e-10 69.3 36 86.1
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.4e-09 66.6 43 65.1
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.9e-07 60.8 61 50.8
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 7.3e-06 56.2 42 64.3


User provided reference genes

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