Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 4.1e-114 414.8 223 100.0
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-64 250.4 204 69.6
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.0e-61 240.7 204 68.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.4e-60 235.7 208 67.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-59 233.0 206 65.5
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.0e-57 224.9 209 64.6
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.0e-56 224.2 205 62.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.0e-56 222.6 208 63.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.6e-56 221.1 204 64.2
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.5e-55 220.3 204 63.7
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-55 219.5 204 63.2
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.6e-54 216.9 204 62.7
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.8e-54 216.1 205 62.9
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.8e-54 216.1 200 64.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.8e-53 213.4 204 63.7
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.5e-52 210.3 205 62.0
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.5e-52 210.3 202 64.4
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.0e-52 209.9 207 60.9
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 4.1e-50 202.2 206 60.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.5e-49 199.1 204 60.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 7.8e-49 198.0 206 62.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.0e-48 197.6 210 60.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.0e-48 197.6 201 60.2
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-48 197.2 206 62.6
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.9e-48 195.7 204 57.8
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.3e-47 192.2 206 59.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.3e-47 192.2 205 57.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 4.3e-47 192.2 201 59.7
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.6e-46 190.3 208 59.1
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.2e-46 188.3 205 59.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.1e-45 187.6 205 59.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-45 187.6 204 57.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.8e-45 186.8 204 56.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.1e-45 186.0 204 57.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.0e-45 185.7 211 55.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.0e-45 185.7 211 55.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.2e-45 185.3 205 59.0
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.2e-45 185.3 205 59.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 8.9e-45 184.5 208 55.3
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.2e-44 184.1 205 58.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-44 183.7 238 54.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-44 183.7 238 54.2
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.6e-44 183.0 203 57.1
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 5.8e-44 181.8 208 56.7
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.3e-43 180.6 301 43.2
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.7e-43 180.3 215 53.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.2e-43 179.9 206 56.3
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.9e-43 179.5 204 56.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.4e-42 177.2 181 60.2
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.4e-42 176.4 210 55.2
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 7.1e-42 174.9 234 50.0
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 7.1e-42 174.9 205 56.6
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 7.1e-42 174.9 206 54.9
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 9.2e-42 174.5 202 54.5
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.3e-40 170.6 208 53.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 3.0e-40 169.5 186 61.3
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 6.6e-40 168.3 232 49.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.6e-40 167.9 206 52.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.1e-39 167.5 271 46.1
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.1e-39 167.5 271 46.1
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.1e-39 167.5 243 48.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.5e-39 167.2 251 47.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.9e-39 166.8 218 54.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.6e-38 163.7 202 52.5
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 2.1e-38 163.3 205 50.2
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.8e-37 160.2 206 55.8
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 5.2e-37 158.7 226 53.1
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.5e-36 157.1 190 54.2
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.0e-36 156.8 214 53.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.4e-36 155.6 218 51.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 4.4e-36 155.6 204 47.1
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 4.4e-36 155.6 195 52.8
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 9.9e-36 154.5 191 55.0
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.3e-35 154.1 289 43.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.7e-35 153.7 197 53.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.9e-35 152.9 218 52.8
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.8e-35 152.5 217 50.7
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.1e-34 151.0 217 51.6
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.4e-34 150.6 210 51.0
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.4e-34 150.6 192 53.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.2e-34 149.4 218 51.4
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.4e-34 148.7 205 49.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 9.3e-34 147.9 206 51.9
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 7.8e-33 144.8 214 51.4
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 7.8e-33 144.8 195 50.8
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.0e-32 144.4 223 51.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.3e-32 144.1 214 49.5
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.3e-32 144.1 206 46.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 6.6e-32 141.7 268 42.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 4.3e-31 139.0 196 52.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 7.3e-31 138.3 254 40.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 9.6e-31 137.9 202 48.5
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 3.1e-29 132.9 195 47.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.0e-29 132.5 309 35.6
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 9.0e-29 131.3 203 48.3
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-28 131.0 130 62.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-28 131.0 130 62.3
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.2e-28 131.0 114 66.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.6e-28 129.8 202 50.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 9.9e-28 127.9 144 56.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-27 127.5 124 60.5
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-27 126.7 234 45.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.9e-27 125.6 200 47.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 8.4e-27 124.8 171 49.7
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.7e-25 119.8 228 43.4
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.5e-25 119.4 119 58.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 4.6e-25 119.0 120 60.8
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 7.9e-25 118.2 120 58.3
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.0e-24 117.9 120 58.3
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.0e-24 117.9 120 58.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.0e-24 117.9 120 59.2
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-24 117.5 177 44.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.9e-24 115.9 202 45.5
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 5.1e-24 115.5 200 47.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.1e-24 115.5 210 44.8
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.6e-22 110.5 124 60.5
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.8e-22 109.8 198 47.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.6e-22 109.4 180 43.9
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.4e-21 107.5 150 49.3
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.2e-20 104.4 121 57.9
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 4.5e-20 102.4 136 52.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.6e-20 101.7 158 45.6
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 9.9e-20 101.3 120 55.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.9e-19 99.8 120 55.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.8e-19 99.4 120 54.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 3.8e-19 99.4 212 42.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 6.4e-19 98.6 85 64.7
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 6.4e-19 98.6 117 53.8
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.1e-18 97.8 121 54.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 9.3e-18 94.7 119 51.3
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 4.6e-17 92.4 85 63.5
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.9e-17 91.7 115 49.6
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.9e-17 91.7 115 49.6
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.9e-17 91.7 115 49.6
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 1.9e-15 87.0 150 42.0
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.3e-13 79.0 87 58.6
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.3e-13 79.0 87 58.6
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.2e-12 77.8 271 32.8
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 5.8e-12 75.5 99 50.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.2e-11 73.6 75 56.0
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 8.4e-11 71.6 73 57.5
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 7.1e-10 68.6 61 63.9
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 4.6e-09 65.9 69 59.4
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 1.5e-07 60.8 80 52.5
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.8e-06 56.6 79 48.1
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.8e-06 56.6 57 50.9
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 8.2e-06 55.1 57 49.1
TAR636G1289 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.2e-06 55.1 54 61.1


User provided reference genes

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