Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 1.2e-253 879.4 441 100.0
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 2.1e-202 709.1 419 83.5
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.0e-201 706.8 420 83.3
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 1.0e-201 706.8 420 83.6
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 1.0e-201 706.8 426 81.9
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.5e-200 703.0 420 82.6
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 1.9e-200 702.6 420 82.1
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 4.3e-200 701.4 420 82.4
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 4.3e-200 701.4 420 82.4
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 7.3e-200 700.7 421 80.8
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 3.6e-199 698.4 420 81.9
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 6.2e-199 697.6 422 81.8
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 8.1e-199 697.2 422 81.5
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 2.4e-198 695.7 424 79.0
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 3.1e-198 695.3 426 80.0
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 4.0e-198 694.9 426 80.5
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 6.9e-198 694.1 425 80.2
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.5e-197 693.0 420 81.2
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 2.0e-197 692.6 427 80.6
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 4.4e-197 691.4 421 80.3
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 1.3e-196 689.9 422 81.3
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 2.9e-196 688.7 421 80.3
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 3.8e-196 688.3 426 80.3
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 4.9e-196 688.0 426 81.0
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 6.4e-196 687.6 420 80.7
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 8.4e-196 687.2 421 79.8
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 8.4e-196 687.2 422 80.1
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 8.4e-196 687.2 424 79.0
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 1.1e-195 686.8 422 80.1
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 1.1e-195 686.8 422 80.1
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 1.4e-195 686.4 422 80.1
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.4e-195 685.6 424 79.2
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 2.4e-195 685.6 421 79.8
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 2.4e-195 685.6 421 79.8
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 4.2e-195 684.9 421 80.8
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 9.3e-195 683.7 421 79.8
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 1.6e-194 682.9 420 79.5
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 2.1e-194 682.6 421 80.3
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 2.1e-194 682.6 421 79.8
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 2.7e-194 682.2 426 78.4
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 2.7e-194 682.2 426 77.5
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 3.5e-194 681.8 421 79.8
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 4.6e-194 681.4 420 81.0
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 1.0e-193 680.2 421 78.6
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.3e-193 679.1 421 78.9
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 3.9e-193 678.3 421 78.9
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 3.9e-193 678.3 421 78.9
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 3.9e-193 678.3 426 78.9
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 3.9e-193 678.3 421 79.6
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 5.1e-193 677.9 426 78.6
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 6.6e-193 677.6 426 78.6
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 2.5e-192 675.6 426 78.9
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 4.3e-192 674.9 429 77.9
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 7.3e-192 674.1 424 79.0
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 9.6e-192 673.7 426 78.2
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 2.8e-191 672.2 429 77.4
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 3.6e-191 671.8 426 78.4
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 3.1e-190 668.7 436 77.5
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 4.0e-190 668.3 426 77.7
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 9.0e-190 667.2 426 77.7
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 1.2e-189 666.8 426 77.9
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.2e-189 666.8 426 77.9
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 5.8e-189 664.5 426 78.6
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 3.8e-188 661.8 417 77.7
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 5.4e-187 657.9 426 74.9
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 2.7e-186 655.6 422 76.5
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 1.8e-185 652.9 426 75.8
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 8.7e-185 650.6 426 75.6
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 1.1e-184 650.2 449 73.5
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.3e-184 648.7 426 75.8
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 3.3e-184 648.7 401 79.3
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 3.3e-184 648.7 426 74.4
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 1.6e-183 646.4 426 74.9
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 1.6e-183 646.4 426 73.7
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.6e-183 646.4 425 74.8
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 6.2e-183 644.4 400 79.5
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.1e-182 643.7 426 73.9
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 1.4e-182 643.3 445 71.9
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 4.0e-182 641.7 426 73.5
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 2.0e-181 639.4 424 75.9
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 9.9e-181 637.1 426 73.2
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 6.0e-178 627.9 401 76.8
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 5.1e-177 624.8 421 75.1
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 1.9e-176 622.9 420 72.1
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 5.6e-176 621.3 424 73.1
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 1.3e-175 620.2 425 71.5
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 4.5e-173 611.7 380 78.7
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 8.4e-172 607.4 425 70.4
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 2.8e-167 592.4 434 69.6
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 3.7e-167 592.0 434 69.4
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 4.1e-166 588.6 421 70.8
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 5.3e-166 588.2 427 68.6
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 1.6e-162 576.6 360 78.9
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 2.1e-162 576.2 579 55.6
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 5.7e-160 568.2 422 69.9
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 2.8e-159 565.8 420 69.0
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 1.5e-157 560.1 419 69.2
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 2.9e-156 555.8 387 71.8
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 7.2e-155 551.2 420 68.1
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.4e-155 550.8 420 66.2
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 6.1e-154 548.1 426 64.8
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.9e-153 545.4 420 65.0
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 2.0e-152 543.1 420 65.0
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.0e-152 543.1 420 64.8
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 2.8e-151 539.3 420 61.4
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 7.2e-147 524.6 426 61.3
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 9.7e-144 514.2 417 60.2
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 7.7e-141 504.6 401 63.8
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.2e-136 490.7 390 61.3
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 1.0e-132 477.6 390 59.7
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.0e-132 477.6 390 60.5
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 1.3e-132 477.2 390 60.0
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 1.1e-131 474.2 431 52.9
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.0e-128 463.4 427 56.0
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 4.4e-128 462.2 405 56.8
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.8e-126 456.8 313 76.0
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 7.0e-126 454.9 391 57.0
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.9e-125 451.8 428 54.7
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 3.8e-124 449.1 420 56.0
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 2.0e-104 383.6 308 61.4
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.2e-97 359.0 232 72.0
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 8.1e-90 335.1 271 57.6
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 4.8e-66 256.1 447 34.9
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 2.3e-60 237.3 175 64.0
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 4.6e-53 213.0 181 58.6
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.0e-31 139.8 115 60.0
Cre16.g647500 Chlamydomonas reinhardtii HOM05D004235 ORTHO05D005157 1.2e-24 118.6 170 34.1
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.9e-24 116.3 109 56.9
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 7.7e-24 115.9 86 65.1
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 4.0e-20 103.6 64 79.7
Oeu052121.2 Olea europaea HOM05D000101 ORTHO05D000089 5.2e-20 103.2 99 51.5
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 2.6e-19 100.9 49 98.0
SEGI_38347 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.0e-15 86.7 63 61.9
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 8.0e-13 79.3 41 92.7
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 5.2e-12 76.6 48 77.1
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 1.7e-10 71.6 41 80.5
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 4.9e-10 70.1 55 61.8
SEGI_21772 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.6e-08 65.1 86 44.2
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 2.3e-07 61.2 37 75.7
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 2.3e-07 61.2 37 75.7
Oeu011926.1 Olea europaea HOM05D004235 ORTHO05D005157 8.6e-07 59.3 47 61.7


User provided reference genes

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