Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.5e-52 209.1 99 100.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 6.1e-38 160.6 98 71.4
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.4e-37 159.5 98 71.4
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.4e-37 159.5 98 71.4
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.8e-37 159.1 98 69.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.8e-37 159.1 98 70.4
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.8e-37 159.1 98 71.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 2.3e-37 158.7 98 71.4
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 4.0e-37 157.9 98 70.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.2e-37 157.5 98 72.4
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.2e-37 157.5 98 72.4
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 5.2e-37 157.5 98 72.4
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 6.8e-37 157.1 99 73.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 6.8e-37 157.1 99 73.7
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 8.8e-37 156.8 98 69.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 8.8e-37 156.8 98 68.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 8.8e-37 156.8 98 72.4
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 8.8e-37 156.8 98 72.4
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 8.8e-37 156.8 98 71.4
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.2e-36 156.4 99 72.7
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.2e-36 156.4 98 71.4
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.5e-36 156.0 99 73.7
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 2.0e-36 155.6 99 72.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 2.0e-36 155.6 98 71.4
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.6e-36 155.2 98 69.4
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.6e-36 155.2 98 70.4
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 2.6e-36 155.2 99 72.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 2.6e-36 155.2 98 69.4
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.4e-36 154.8 98 70.4
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 4.4e-36 154.5 99 72.7
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 4.4e-36 154.5 98 66.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 4.4e-36 154.5 98 66.3
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.4e-36 154.5 97 69.1
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 4.4e-36 154.5 98 68.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 4.4e-36 154.5 97 70.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 5.7e-36 154.1 99 71.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 5.7e-36 154.1 99 72.7
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 5.7e-36 154.1 98 68.4
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 7.5e-36 153.7 99 71.7
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 7.5e-36 153.7 98 69.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 9.8e-36 153.3 97 69.1
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 9.8e-36 153.3 97 70.1
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 9.8e-36 153.3 97 70.1
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 9.8e-36 153.3 98 71.4
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 9.8e-36 153.3 98 68.4
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.3e-35 152.9 99 71.7
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.3e-35 152.9 99 71.7
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.3e-35 152.9 98 66.3
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.7e-35 152.5 98 72.4
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.7e-35 152.5 98 66.3
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.2e-35 152.1 95 70.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.2e-35 152.1 97 67.0
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.8e-35 151.8 99 71.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 3.7e-35 151.4 98 65.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 3.7e-35 151.4 97 67.0
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 3.7e-35 151.4 98 65.3
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.9e-35 151.0 97 66.0
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 4.9e-35 151.0 98 66.3
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 6.3e-35 150.6 97 69.1
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 6.3e-35 150.6 98 69.4
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 8.3e-35 150.2 98 66.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 8.3e-35 150.2 97 66.0
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 8.3e-35 150.2 97 67.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 1.1e-34 149.8 98 68.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.4e-34 149.4 98 65.3
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.4e-34 149.4 96 66.7
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.8e-34 149.1 95 69.5
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.8e-34 149.1 98 67.3
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.4e-34 148.7 98 66.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 3.1e-34 148.3 96 67.7
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 5.4e-34 147.5 97 68.0
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.2e-34 146.7 95 65.3
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.2e-34 146.7 98 66.3
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.2e-33 146.4 98 67.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.6e-33 146.0 99 70.7
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.0e-33 145.6 98 64.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 2.0e-33 145.6 97 71.1
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.0e-33 145.6 98 66.3
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.7e-33 145.2 98 64.3
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 3.5e-33 144.8 98 65.3
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.5e-33 144.4 98 65.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 4.5e-33 144.4 93 66.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 4.5e-33 144.4 98 64.3
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 4.5e-33 144.4 98 64.3
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.0e-32 143.3 98 62.2
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.0e-32 143.3 95 64.2
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.3e-32 142.9 98 64.3
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.3e-32 142.9 96 66.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.9e-32 141.7 98 65.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.9e-32 141.7 98 65.3
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.9e-32 141.7 98 62.2
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 2.9e-32 141.7 95 63.2
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 5.0e-32 141.0 98 63.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.0e-32 141.0 110 58.2
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 7.3e-31 137.1 96 62.5
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.6e-30 134.8 98 58.2
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 4.7e-30 134.4 150 48.0
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.0e-29 133.3 99 62.6
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.4e-29 132.9 98 61.2
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.8e-29 132.5 98 61.2
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.0e-29 131.7 98 59.2
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.0e-29 131.7 98 59.2
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.9e-29 130.2 98 57.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 2.0e-28 129.0 98 61.2
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 7.5e-28 127.1 97 59.8
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.2e-27 125.6 90 60.0
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 2.9e-27 125.2 98 57.1
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 2.9e-27 125.2 97 58.8
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 4.9e-27 124.4 97 59.8
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 8.3e-27 123.6 98 59.2
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 2.4e-26 122.1 98 56.1
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 3.2e-26 121.7 97 55.7
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.2e-26 121.7 98 56.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 9.2e-26 120.2 96 58.3
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-24 115.5 98 55.1
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-24 115.5 98 55.1
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.9e-24 114.8 98 54.1
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 5.0e-24 114.4 95 55.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 5.0e-24 114.4 91 56.0
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.6e-23 110.9 93 53.8
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 9.5e-23 110.2 97 55.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-21 106.7 95 53.7
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 5.8e-20 100.9 91 53.8
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.3e-19 99.8 98 46.9
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-19 98.2 93 54.8
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.4e-19 97.4 81 54.3
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.1e-18 96.7 98 50.0
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 5.4e-18 94.4 57 71.9
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.4e-18 94.4 79 55.7
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.0e-17 92.4 97 48.5
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 3.5e-17 91.7 99 45.5
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.7e-16 89.4 57 61.4
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.0e-16 88.6 57 64.9
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 8.6e-16 87.0 62 56.5
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.1e-15 86.7 91 41.8
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-14 83.2 86 47.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 8.1e-14 80.5 58 56.9
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.2e-12 76.6 50 64.0
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.4e-12 75.1 78 50.0
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.2e-09 66.6 85 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 2.7e-09 65.5 59 50.8
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 6.0e-09 64.3 47 59.6
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 7.8e-09 63.9 41 73.2
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.3e-08 63.2 47 59.6
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.3e-08 63.2 39 66.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.3e-08 62.4 44 63.6
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.9e-08 61.6 93 37.6
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 5.1e-08 61.2 40 70.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 5.6e-07 57.8 93 35.5
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.8e-06 55.5 55 43.6
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 8.1e-06 53.9 46 56.5


User provided reference genes

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