Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.1e-168 596.7 321 100.0
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.2e-122 443.7 323 74.6
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.5e-120 436.0 321 77.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.1e-119 433.0 315 76.5
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.1e-119 433.0 320 74.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.8e-118 429.9 321 76.0
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 5.1e-118 428.3 325 73.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 6.7e-118 427.9 318 75.5
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 6.7e-118 427.9 292 78.4
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 8.7e-118 427.6 326 73.9
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.9e-117 426.4 318 73.0
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.9e-117 426.4 314 74.2
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.8e-116 422.5 322 72.4
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.4e-115 420.2 307 75.6
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.4e-115 419.5 322 71.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.1e-115 419.1 337 70.9
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.0e-115 418.7 324 71.6
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 4.0e-115 418.7 321 72.0
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.3e-115 418.3 303 75.6
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 5.3e-115 418.3 285 78.2
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 6.9e-115 417.9 321 72.3
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 9.0e-115 417.5 276 80.1
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.2e-114 417.2 259 83.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.5e-114 416.8 323 71.8
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.0e-114 416.4 323 71.8
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 5.8e-114 414.8 278 77.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.6e-114 414.5 326 71.2
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.0e-113 414.1 286 78.3
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.3e-113 413.7 324 71.9
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.7e-113 413.3 267 80.9
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.2e-113 412.9 323 70.3
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 3.8e-113 412.1 311 72.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.9e-113 411.8 300 73.7
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.9e-112 409.8 317 69.7
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.9e-112 409.8 326 72.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.5e-112 409.5 257 81.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.1e-112 407.9 276 76.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 9.3e-112 407.5 262 80.5
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 2.1e-111 406.4 311 71.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.1e-111 406.4 282 79.1
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.7e-111 406.0 291 73.5
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.7e-111 406.0 257 82.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.7e-111 406.0 282 77.3
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 7.9e-111 404.4 304 73.4
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.0e-110 404.1 305 72.5
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.0e-110 404.1 305 71.5
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 5.1e-110 401.7 316 71.5
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 6.7e-110 401.4 293 74.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 6.7e-110 401.4 259 80.3
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.1e-109 400.6 274 76.3
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 3.3e-109 399.1 302 71.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.3e-109 399.1 316 69.6
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 4.3e-109 398.7 277 77.6
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 4.3e-109 398.7 268 77.2
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 5.7e-109 398.3 334 67.7
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 7.4e-109 397.9 323 66.6
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 7.4e-109 397.9 263 78.7
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 9.7e-109 397.5 343 67.3
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.6e-108 396.7 296 71.6
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.2e-108 396.4 334 67.4
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.2e-108 396.4 280 74.3
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.3e-108 394.8 291 71.5
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.1e-107 394.0 259 78.4
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.1e-107 394.0 319 67.7
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.4e-107 393.7 297 70.7
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.1e-107 392.5 309 68.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.9e-107 391.3 310 67.1
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 6.9e-107 391.3 297 74.4
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-106 389.8 261 77.8
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.0e-106 389.8 310 68.7
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.6e-106 389.4 266 75.2
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.6e-106 389.4 325 67.7
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 3.4e-106 389.0 268 74.3
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 3.4e-106 389.0 261 77.0
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 7.7e-106 387.9 325 65.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 7.7e-106 387.9 310 66.5
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.3e-105 387.1 320 65.9
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.7e-105 386.7 310 66.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.2e-105 386.3 323 67.5
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.9e-105 386.0 316 66.5
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 5.0e-105 385.2 330 65.2
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.2e-103 380.6 266 74.4
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.1e-103 379.8 310 65.5
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 2.1e-103 379.8 326 65.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.7e-103 379.4 320 64.4
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 8.8e-102 374.4 259 76.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 7.4e-101 371.3 259 75.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 9.7e-101 370.9 357 60.5
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.7e-100 370.2 375 59.7
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.8e-100 369.4 280 71.8
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.1e-99 367.5 257 73.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.4e-99 367.1 284 68.0
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 2.2e-97 359.8 240 79.2
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 2.2e-97 359.8 240 79.2
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.2e-96 355.5 287 67.9
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 3.6e-95 352.4 315 61.9
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.0e-94 349.4 235 76.6
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 5.1e-94 348.6 240 74.2
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 3.3e-93 345.9 258 68.2
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.4e-91 339.7 257 74.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 2.5e-88 329.7 446 47.1
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.0e-86 322.8 219 77.6
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.4e-85 318.9 225 77.3
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.4e-83 313.2 218 78.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 9.1e-83 311.2 269 58.7
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.6e-82 310.5 223 74.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.0e-82 310.1 267 67.4
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 6.8e-78 295.0 257 59.5
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 4.8e-76 288.9 274 56.9
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 7.0e-75 285.0 242 61.2
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.3e-73 280.8 272 51.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.7e-73 280.4 278 57.2
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 3.2e-72 276.2 179 80.4
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 2.7e-71 273.1 299 54.5
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.1e-67 259.6 252 55.6
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.6e-66 257.3 181 77.9
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 3.2e-59 233.0 202 67.3
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 6.1e-55 218.8 238 50.8
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.2e-53 214.5 274 46.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 1.5e-53 214.2 144 75.7
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.3e-52 208.4 210 54.3
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.6e-48 195.7 311 40.5
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.2e-46 189.1 265 42.6
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 5.8e-45 185.7 171 59.6
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 6.4e-28 129.0 109 69.7
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 5.4e-27 125.9 98 70.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 3.5e-26 123.2 136 58.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 7.3e-24 115.5 82 75.6
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 7.3e-16 89.0 57 82.5
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.3e-15 88.2 59 83.1
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.3e-14 82.8 62 61.3
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.1e-08 65.1 48 56.2
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 5.6e-08 62.8 87 50.6
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.3e-07 61.6 71 43.7
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.6e-07 61.2 40 62.5
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 6.2e-07 59.3 42 66.7


User provided reference genes

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