Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 7.4e-56 220.3 113 100.0
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 6.1e-26 120.9 98 64.3
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 8.0e-26 120.6 96 65.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.4e-25 119.8 97 63.9
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 5.7e-24 114.4 100 65.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 5.7e-24 114.4 84 65.5
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.2e-23 112.5 91 63.7
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.2e-23 112.5 105 58.1
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.9e-23 112.1 101 56.4
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.7e-23 111.7 102 60.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.4e-22 109.8 73 71.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.4e-22 109.8 93 60.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.8e-22 109.4 100 60.0
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-22 109.0 99 62.6
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-22 108.6 99 61.6
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.1e-22 108.2 95 63.2
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 9.2e-22 107.1 91 63.7
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 9.2e-22 107.1 80 65.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-21 106.3 103 58.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-21 105.9 99 61.6
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.7e-21 105.5 101 58.4
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.6e-21 104.8 92 60.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.7e-20 102.8 97 55.7
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.7e-20 102.8 84 65.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 2.3e-20 102.4 93 58.1
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.0e-20 102.1 88 62.5
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 5.0e-20 101.3 96 58.3
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 5.0e-20 101.3 96 58.3
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.0e-20 101.3 91 58.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.6e-20 100.9 96 59.4
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.9e-19 99.4 93 58.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 5.6e-19 97.8 63 73.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 7.3e-19 97.4 101 51.5
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-18 96.7 96 56.2
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.2e-18 94.4 100 53.0
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.1e-17 93.6 103 53.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.1e-17 93.6 85 52.9
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.3e-17 92.4 96 57.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.1e-17 92.0 88 56.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 3.1e-17 92.0 97 52.6
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 4.0e-17 91.7 88 56.8
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.8e-17 90.9 105 54.3
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 6.8e-17 90.9 93 53.8
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 8.9e-17 90.5 73 58.9
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.5e-16 89.7 86 57.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-16 89.7 84 59.5
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.4e-16 88.6 75 61.3
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.4e-16 88.2 95 51.6
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 4.4e-16 88.2 110 47.3
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.8e-16 87.8 100 50.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.8e-16 87.8 100 50.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.8e-16 87.8 75 57.3
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 7.5e-16 87.4 98 53.1
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 7.5e-16 87.4 100 50.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 7.5e-16 87.4 71 57.7
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 9.8e-16 87.0 93 53.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.3e-15 86.7 76 57.9
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-15 86.7 81 58.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-15 86.7 78 59.0
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.3e-15 86.7 90 53.3
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-15 85.9 96 54.2
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-15 85.9 78 55.1
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 2.9e-15 85.5 81 54.3
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.9e-15 85.5 91 52.7
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.9e-15 85.5 88 51.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.7e-15 85.1 76 53.9
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 4.9e-15 84.7 83 55.4
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 8.3e-15 84.0 92 50.0
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.3e-15 84.0 79 57.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.3e-15 84.0 69 56.5
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.1e-14 83.6 82 51.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.4e-14 83.2 87 51.7
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.4e-14 83.2 96 47.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-14 82.8 68 63.2
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-14 82.8 85 52.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-14 82.8 85 52.9
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.4e-14 82.4 78 51.3
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.4e-14 82.4 84 53.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.2e-14 82.0 84 51.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 3.2e-14 82.0 97 48.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.2e-14 82.0 92 50.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-14 82.0 91 57.1
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 3.2e-14 82.0 96 50.0
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.1e-14 81.6 68 60.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 4.1e-14 81.6 87 51.7
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.1e-14 81.6 96 50.0
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.4e-14 81.3 94 50.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 5.4e-14 81.3 92 51.1
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 5.4e-14 81.3 81 59.3
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.4e-14 81.3 97 49.5
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 5.4e-14 81.3 75 58.7
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.2e-14 80.5 61 63.9
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 9.2e-14 80.5 88 48.9
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.6e-13 79.7 69 58.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.0e-13 79.3 85 51.8
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.5e-13 78.6 96 49.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.5e-13 78.6 67 59.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.5e-13 78.6 94 44.7
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 6.0e-13 77.8 81 54.3
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 7.8e-13 77.4 95 46.3
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 7.8e-13 77.4 72 48.6
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 7.8e-13 77.4 76 53.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.0e-12 77.0 85 48.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.0e-12 77.0 97 48.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.0e-12 77.0 78 50.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.0e-12 77.0 78 51.3
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.0e-12 77.0 82 56.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.7e-12 76.3 86 45.3
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-12 76.3 88 47.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.3e-12 75.9 84 48.8
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 5.0e-12 74.7 81 49.4
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 5.0e-12 74.7 52 63.5
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.0e-12 74.7 52 63.5
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 6.6e-12 74.3 78 55.1
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 8.6e-12 73.9 81 50.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 73 53.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.1e-11 73.6 100 45.0
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-11 73.6 78 51.3
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.5e-11 73.2 84 46.4
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.5e-11 73.2 78 55.1
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.5e-11 73.2 79 49.4
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.9e-11 72.8 101 46.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.5e-11 72.4 101 46.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.3e-11 72.0 91 48.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.3e-11 70.9 87 49.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.2e-10 70.1 72 54.2
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.8e-10 68.9 105 42.9
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 4.7e-10 68.2 96 42.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.7e-10 68.2 84 41.7
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 4.7e-10 68.2 90 44.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.1e-10 67.4 52 61.5
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 8.1e-10 67.4 103 40.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-09 67.0 101 44.6
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-09 67.0 105 44.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.4e-09 66.6 77 46.8
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.4e-09 66.6 78 46.2
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.8e-09 66.2 83 44.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.3e-09 65.9 78 44.9
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.3e-09 65.9 78 44.9
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.2e-09 64.7 62 48.4
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.8e-09 64.3 82 42.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.5e-08 63.2 74 47.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-08 62.8 55 54.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.4e-08 62.0 42 69.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.4e-08 61.6 106 39.6
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.7e-07 59.7 78 43.6
Os02g0234700 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 2.2e-07 59.3 72 45.8
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 8.3e-07 57.4 74 44.6
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.4e-06 56.6 48 58.3
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 7.1e-06 54.3 78 42.3
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 7.1e-06 54.3 35 68.6


User provided reference genes

Program Settings