Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.0e-282 976.1 506 100.0
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 4.7e-110 402.5 535 44.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.3e-107 394.4 548 42.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.0e-104 384.8 557 41.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 8.1e-102 375.2 591 38.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 8.1e-94 348.6 603 35.7
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.1e-93 348.2 606 35.3
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.8e-93 347.4 606 35.3
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.2e-83 313.9 585 36.1
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 4.6e-81 306.2 394 46.4
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 9.6e-79 298.5 426 43.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 3.7e-78 296.6 501 38.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 6.2e-78 295.8 415 43.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.8e-77 294.3 586 37.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 4.0e-77 293.1 587 38.8
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 9.0e-77 292.0 631 33.8
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.2e-76 291.6 610 34.6
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.9e-75 287.0 553 34.2
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 6.5e-75 285.8 556 34.9
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 7.1e-74 282.3 423 41.1
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 5.1e-72 276.2 508 37.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 7.4e-71 272.3 429 39.2
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.8e-70 270.4 409 40.8
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 4.8e-70 269.6 527 37.0
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.8e-70 269.6 548 36.3
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.4e-69 267.3 559 32.9
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.7e-67 261.2 472 36.2
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 6.5e-67 259.2 511 36.2
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 4.2e-66 256.5 505 35.6
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 7.2e-66 255.8 509 35.6
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 7.9e-65 252.3 539 34.7
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.3e-64 251.5 392 40.8
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.1e-63 248.4 504 35.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.5e-63 248.1 529 33.6
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.5e-63 248.1 541 33.8
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 7.4e-63 245.7 528 35.2
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 2.2e-62 244.2 512 35.2
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.6e-60 237.3 513 35.1
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 7.7e-60 235.7 517 35.8
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.0e-59 235.3 513 34.9
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 2.9e-59 233.8 517 35.6
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-57 228.4 312 40.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.1e-57 227.6 516 34.3
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.6e-57 226.9 359 40.7
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 6.7e-56 222.6 601 34.6
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.7e-54 216.9 522 33.3
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 1.4e-50 204.9 704 31.4
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 4.2e-50 203.4 502 33.5
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.1e-45 188.7 316 38.0
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.8e-45 188.0 471 34.4
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 5.3e-45 186.4 291 41.2
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.9e-43 180.6 314 39.5
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 6.5e-43 179.5 190 52.1
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 6.5e-43 179.5 217 43.3
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.9e-42 177.9 301 36.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.2e-41 175.3 190 52.6
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.2e-41 175.3 295 40.0
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 6.1e-41 172.9 283 39.6
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.8e-40 171.4 192 50.0
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 1.8e-40 171.4 309 37.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 2.6e-39 167.5 299 36.1
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 4.4e-39 166.8 298 39.3
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.7e-38 164.9 283 39.2
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 6.3e-38 162.9 284 37.3
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 6.3e-38 162.9 230 44.8
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 8.2e-38 162.5 285 37.9
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.4e-37 161.8 297 37.0
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.8e-37 161.4 276 41.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 9.1e-37 159.1 304 35.5
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-36 158.7 208 45.7
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.5e-36 157.1 312 35.3
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.5e-36 157.1 198 47.0
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.9e-36 156.4 206 44.7
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.9e-36 156.4 282 35.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.3e-35 155.2 190 47.9
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.8e-35 153.7 291 35.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 3.2e-34 150.6 292 35.3
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.2e-34 150.6 288 34.0
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.5e-34 149.8 189 46.6
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.7e-33 147.5 281 35.2
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.4e-31 140.2 287 35.5
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 2.2e-30 137.9 328 32.3
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.2e-30 137.9 304 32.9
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.7e-30 137.1 341 30.8
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 6.3e-30 136.3 288 36.1
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 6.3e-30 136.3 186 44.1
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 8.3e-30 136.0 349 31.8
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.1e-29 134.0 321 32.4
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 5.4e-29 133.3 188 41.0
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.4e-29 133.3 122 54.1
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 7.0e-29 132.9 285 32.3
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 7.0e-29 132.9 287 31.0
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.6e-28 131.7 293 33.4
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.5e-28 130.2 305 33.8
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 5.9e-28 129.8 263 34.6
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 2.9e-27 127.5 313 33.2
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.9e-27 127.5 209 40.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 3.8e-27 127.1 191 40.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 8.5e-27 125.9 280 31.4
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.2e-26 122.9 205 34.6
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.6e-25 121.7 205 34.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.6e-25 120.6 303 31.0
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.8e-24 118.2 203 36.0
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.0e-24 117.5 205 33.7
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 6.8e-24 116.3 351 30.8
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.7e-23 113.2 95 51.6
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.7e-22 111.7 287 30.3
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.1e-21 107.5 302 29.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 4.1e-21 107.1 306 28.8
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 4.5e-20 103.6 96 47.9
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.8e-19 100.5 174 40.2
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.3e-18 97.4 75 52.0
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.4e-16 92.0 102 42.2
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 6.8e-16 89.7 66 63.6
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.7e-15 86.7 83 44.6
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 8.3e-14 82.8 298 26.2
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 8.3e-14 82.8 99 41.4
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.8e-13 81.6 234 28.6
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.8e-13 81.6 94 40.4
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 5.4e-13 80.1 99 39.4
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.0e-12 78.2 58 60.3
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.6e-12 77.0 249 28.5
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 4.6e-12 77.0 208 28.8
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 7.8e-12 76.3 214 31.3
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.1e-10 72.4 74 48.6
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 3.6e-09 67.4 62 46.8
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.6e-09 67.4 47 55.3
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.5e-07 62.0 112 37.5
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 4.4e-07 60.5 184 34.2


User provided reference genes

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