Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 3.1e-96 355.1 180 100.0
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 5.2e-27 125.2 189 43.4
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.2e-26 124.0 198 43.4
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.5e-26 123.6 199 43.7
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.5e-26 123.6 199 43.7
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.5e-26 123.6 199 43.7
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 2.0e-26 123.2 175 46.3
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 2.2e-25 119.8 199 42.2
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.9e-25 118.6 207 39.1
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 6.3e-25 118.2 203 40.9
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 8.3e-25 117.9 212 41.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.1e-24 117.5 200 42.5
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.8e-24 116.7 211 40.3
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.8e-24 116.7 198 42.9
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 2.4e-24 116.3 187 41.7
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 3.1e-24 115.9 186 42.5
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.1e-24 115.5 193 38.9
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 4.1e-24 115.5 198 41.4
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 4.1e-24 115.5 200 42.0
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 4.1e-24 115.5 200 41.5
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 5.4e-24 115.2 195 42.6
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 9.2e-24 114.4 210 40.0
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-23 114.0 185 39.5
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.2e-23 114.0 198 39.9
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.0e-23 113.2 210 38.1
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.0e-23 113.2 190 40.5
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 2.0e-23 113.2 210 40.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 2.7e-23 112.8 213 39.4
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 2.7e-23 112.8 198 41.4
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 2.7e-23 112.8 177 41.2
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 3.5e-23 112.5 198 41.4
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.5e-23 112.1 184 40.8
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 5.9e-23 111.7 204 36.8
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 5.9e-23 111.7 211 38.9
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 7.8e-23 111.3 201 40.8
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 7.8e-23 111.3 188 41.0
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-22 110.9 172 42.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 1.0e-22 110.9 200 42.0
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.0e-22 110.9 199 41.7
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.3e-22 110.5 201 40.8
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.7e-22 110.2 198 40.4
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.9e-22 109.4 209 40.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.9e-22 109.4 198 38.9
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 3.8e-22 109.0 191 39.3
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 3.8e-22 109.0 199 43.2
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 3.8e-22 109.0 174 39.1
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 5.0e-22 108.6 179 41.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 6.6e-22 108.2 183 41.0
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 8.6e-22 107.8 200 39.5
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.1e-21 107.5 211 38.4
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.5e-21 107.1 210 38.6
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.5e-21 107.1 210 38.6
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.5e-21 107.1 210 38.6
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.5e-21 107.1 188 38.3
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.5e-21 107.1 180 39.4
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.5e-21 107.1 210 38.1
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.5e-21 107.1 175 40.0
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.5e-21 107.1 206 35.0
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.9e-21 106.7 161 43.5
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.9e-21 106.7 172 42.4
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.5e-21 106.3 188 38.3
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 3.3e-21 105.9 210 37.1
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 3.3e-21 105.9 174 42.0
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 3.3e-21 105.9 210 37.6
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 3.3e-21 105.9 211 39.3
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.3e-21 105.5 209 39.7
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 5.6e-21 105.1 188 37.8
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 5.6e-21 105.1 201 39.8
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.6e-21 105.1 209 37.8
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.6e-21 105.1 209 37.8
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 5.6e-21 105.1 210 36.7
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 5.6e-21 105.1 210 36.7
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 7.3e-21 104.8 210 38.6
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 7.3e-21 104.8 174 43.7
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 9.5e-21 104.4 209 39.2
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.2e-20 104.0 210 37.1
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 2.8e-20 102.8 210 36.7
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.6e-20 102.4 199 36.2
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 3.6e-20 102.4 188 37.2
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 4.7e-20 102.1 191 38.7
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 4.7e-20 102.1 176 40.9
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 4.7e-20 102.1 185 38.4
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.0e-19 100.9 177 37.3
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 1.4e-19 100.5 200 37.5
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.4e-19 100.5 178 41.0
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.8e-19 100.1 237 34.2
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 2.3e-19 99.8 210 35.7
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 8.9e-19 97.8 231 35.9
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.2e-18 97.4 162 40.7
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.5e-18 97.1 184 37.5
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 2.0e-18 96.7 200 37.0
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 2.2e-17 93.2 176 36.9
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 7.0e-16 88.2 187 34.8
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 5.9e-15 85.1 152 34.9
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.0e-14 84.3 152 40.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.0e-14 82.0 213 34.3
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 8.6e-14 81.3 125 40.8
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.1e-13 80.9 123 39.8
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 2.5e-13 79.7 169 35.5
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 4.3e-13 79.0 144 38.9
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 1.6e-12 77.0 70 54.3
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 3.6e-12 75.9 108 41.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.1e-11 74.3 75 52.0
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 4.0e-11 72.4 60 65.0
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 6.8e-11 71.6 66 53.0
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 4.4e-10 68.9 147 34.7
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 6.4e-09 65.1 40 77.5
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 8.3e-09 64.7 57 64.9
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.4e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 9.2e-08 61.2 47 66.0
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.2e-07 60.8 131 33.6
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.6e-07 60.5 92 42.4
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 2.7e-07 59.7 58 55.2
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 6.6e-06 55.1 34 70.6


User provided reference genes

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