Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 2.7e-280 968.0 492 100.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 4.0e-170 602.1 496 62.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.3e-168 597.0 493 60.6
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.8e-168 595.9 493 60.9
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 3.1e-167 592.4 498 60.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.6e-166 590.1 493 59.8
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.6e-166 590.1 493 60.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 7.7e-166 587.8 496 60.9
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.3e-165 587.0 493 60.0
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.5e-165 584.7 497 60.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.9e-164 583.2 493 62.5
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.2e-164 582.4 496 61.1
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.5e-164 581.6 495 60.8
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 7.2e-164 581.3 494 60.7
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-163 580.5 493 59.6
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.6e-163 580.1 495 60.6
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.1e-163 579.7 477 63.3
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.3e-162 576.2 495 59.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 1.3e-160 570.5 497 59.2
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.2e-158 563.9 493 57.0
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 3.5e-158 562.4 490 59.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.6e-157 558.1 493 56.6
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.5e-156 554.3 493 56.2
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.6e-155 552.4 493 56.2
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 6.1e-155 551.6 496 57.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 8.0e-155 551.2 494 56.9
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.0e-154 550.8 493 55.8
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.0e-154 550.8 495 57.2
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.0e-154 548.9 493 56.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 8.9e-154 547.7 493 58.4
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-152 543.9 493 56.6
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.3e-152 543.9 497 55.1
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.3e-152 543.9 494 58.3
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.3e-152 541.2 493 56.4
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.1e-151 540.8 499 56.5
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.1e-151 539.3 502 55.0
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 7.0e-151 538.1 493 56.2
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 7.0e-151 538.1 494 56.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.0e-150 536.6 492 56.1
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-149 534.3 492 55.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.3e-149 533.9 493 55.8
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 2.9e-149 532.7 496 56.5
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 3.9e-149 532.3 480 57.3
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 3.9e-149 532.3 488 57.4
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 4.3e-148 528.9 486 53.9
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 9.5e-148 527.7 481 56.1
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.1e-147 525.0 495 54.9
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.1e-146 522.7 487 56.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.2e-145 520.8 486 55.3
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.5e-145 520.4 490 55.1
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 3.4e-145 519.2 491 54.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.4e-145 519.2 487 53.8
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.7e-144 516.9 480 54.8
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 6.4e-144 515.0 498 53.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 6.4e-144 515.0 498 53.8
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.1e-143 514.2 482 55.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 3.2e-143 512.7 492 53.9
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 5.4e-143 511.9 493 55.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 5.4e-143 511.9 478 55.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 7.0e-143 511.5 490 53.9
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.0e-143 511.5 482 53.5
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.7e-142 509.6 499 53.3
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 6.0e-142 508.4 494 54.5
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.7e-141 506.9 495 54.3
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 6.6e-141 505.0 491 54.0
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 8.6e-141 504.6 486 54.9
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.5e-140 503.1 487 52.8
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 7.3e-140 501.5 422 60.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 4.7e-139 498.8 495 51.9
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 6.2e-139 498.4 495 53.7
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.0e-139 498.0 493 51.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.3e-138 496.5 492 52.8
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 2.3e-138 496.5 492 52.8
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 8.9e-138 494.6 372 65.9
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 1.3e-136 490.7 495 52.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.1e-135 487.6 493 52.7
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.1e-135 487.6 495 52.5
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.4e-135 487.3 485 52.2
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.4e-135 487.3 487 52.2
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.9e-135 486.9 491 51.1
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 3.2e-135 486.1 486 50.8
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 4.1e-135 485.7 495 51.7
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 9.2e-135 484.6 480 53.1
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 9.2e-135 484.6 499 51.7
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.6e-134 483.8 485 52.0
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.1e-134 483.4 490 50.8
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 6.0e-134 481.9 484 52.5
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 6.0e-134 481.9 486 52.9
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.0e-133 481.1 481 52.2
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.3e-133 480.7 485 51.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.5e-132 477.2 473 53.7
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-131 474.2 495 51.9
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-131 474.2 492 50.8
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 2.1e-131 473.4 372 61.0
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.8e-130 470.3 497 51.3
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.7e-128 463.8 480 51.5
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.2e-128 463.4 488 51.6
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-128 462.6 542 47.8
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 8.3e-128 461.5 484 50.8
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 3.2e-127 459.5 381 59.1
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 6.0e-126 455.3 487 50.1
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-125 454.5 497 50.1
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.1e-125 452.2 489 50.5
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 5.1e-125 452.2 497 50.1
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-121 440.7 467 51.6
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.4e-119 433.3 493 47.1
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.1e-118 430.3 489 50.1
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.7e-118 429.9 483 46.6
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 4.8e-115 419.1 438 51.8
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.0e-106 388.3 415 49.9
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.4e-98 364.4 326 55.8
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 6.9e-98 362.1 464 43.5
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.9e-98 362.1 409 48.2
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-96 356.7 288 60.4
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 4.2e-95 352.8 289 60.2
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 7.1e-95 352.1 524 38.4
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-93 346.7 288 59.7
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 1.6e-91 340.9 472 42.8
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.5e-89 334.3 493 39.6
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 6.5e-88 328.9 373 47.5
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 5.5e-87 325.9 270 58.9
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 2.2e-83 313.9 379 48.3
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 6.3e-83 312.4 468 39.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.7e-81 305.4 490 37.6
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 5.5e-79 299.3 418 41.1
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.8e-74 284.3 293 48.1
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.0e-72 278.5 260 56.2
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.4e-71 271.9 356 41.9
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 6.7e-69 265.8 472 34.1
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.1e-68 265.0 376 39.4
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.7e-68 262.7 431 35.0
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.5e-65 253.4 183 70.5
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 5.2e-61 239.6 557 30.5
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-60 238.0 322 43.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 4.4e-60 236.5 600 29.7
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 9.7e-60 235.3 164 65.2
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 2.4e-58 230.7 247 52.6
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 7.7e-57 225.7 231 49.8
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-56 225.3 184 60.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.5e-55 220.7 493 32.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 4.2e-55 219.9 474 32.9
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.2e-55 219.9 267 47.2
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 9.4e-55 218.8 491 31.6
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.1e-54 217.6 171 63.2
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 8.8e-53 212.2 376 33.2
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.3e-51 208.4 478 29.7
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.6e-49 201.4 625 27.2
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 3.0e-45 187.2 452 31.0
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 5.2e-45 186.4 199 51.3
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 9.8e-44 182.2 363 33.1
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.3e-43 181.8 282 39.7
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 7.0e-42 176.0 269 40.5
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 8.6e-40 169.1 255 41.6
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 9.5e-39 165.6 415 30.6
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 4.6e-33 146.7 146 53.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.2e-30 138.7 476 26.9
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.1e-30 137.9 122 51.6
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 8.0e-30 136.0 127 55.9
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.2e-28 132.1 92 67.4
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-28 131.0 97 61.9
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-27 128.6 151 49.0
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 5.4e-26 123.2 118 54.2
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.5e-25 120.6 316 30.4
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-24 118.2 125 51.2
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 3.9e-24 117.1 124 51.6
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 5.0e-24 116.7 117 48.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 9.8e-20 102.4 290 29.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 4.1e-18 97.1 103 42.7
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 6.2e-14 83.2 146 36.3
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.0e-09 66.6 73 49.3


User provided reference genes

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