Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 2.3e-97 359.0 195 100.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.0e-53 213.0 195 60.5
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.4e-48 195.7 189 59.3
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.4e-48 195.7 189 59.3
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 5.8e-48 194.9 192 60.4
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 9.9e-48 194.1 193 57.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.3e-47 193.7 193 58.5
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-47 193.7 195 59.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.7e-47 193.4 193 61.1
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.9e-47 192.6 195 56.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 3.7e-47 192.2 192 60.4
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.1e-45 186.4 191 58.6
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 2.7e-45 186.0 193 59.6
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.6e-45 185.3 185 58.4
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 6.0e-45 184.9 193 55.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 6.0e-45 184.9 193 54.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 6.0e-45 184.9 194 56.7
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 7.8e-45 184.5 190 58.9
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.8e-45 184.5 192 57.3
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.0e-44 184.1 190 59.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.3e-44 183.7 194 58.2
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.7e-44 183.3 191 57.6
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.7e-44 183.3 194 57.7
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.0e-44 182.6 209 51.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.6e-44 181.4 195 57.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.5e-43 180.3 184 57.1
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.5e-43 180.3 196 55.6
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 3.3e-43 179.1 188 55.9
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 7.3e-43 177.9 193 56.0
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 4.7e-42 175.3 188 55.3
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.7e-42 175.3 194 53.1
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 6.2e-42 174.9 195 53.8
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.4e-41 173.7 192 53.1
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.4e-41 172.9 180 54.4
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 5.2e-41 171.8 179 57.5
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 8.9e-41 171.0 187 54.0
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.2e-40 170.6 177 57.6
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 9.9e-40 167.5 193 56.5
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.7e-39 166.8 190 51.6
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.2e-39 166.4 196 56.6
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.8e-39 165.6 188 52.1
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 7.1e-38 161.4 195 51.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-37 160.6 188 52.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.6e-37 160.2 193 54.4
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.6e-37 158.7 186 51.6
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.0e-36 157.5 190 51.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.7e-36 156.8 185 52.4
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.0e-36 156.0 186 53.8
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.1e-36 155.2 198 50.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.1e-35 154.1 190 50.0
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.5e-35 153.7 190 52.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.9e-35 153.3 189 51.3
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.3e-35 152.1 196 48.0
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.2e-34 150.6 191 50.8
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.6e-34 150.2 186 50.0
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.6e-34 150.2 186 50.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 1.6e-34 150.2 191 49.7
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 2.8e-34 149.4 188 46.8
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.8e-34 149.4 191 49.7
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.8e-34 149.4 192 51.0
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.1e-33 147.5 182 47.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.8e-33 146.7 195 49.2
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 6.9e-33 144.8 186 49.5
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 6.9e-33 144.8 185 51.9
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 9.0e-33 144.4 197 44.7
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.6e-32 142.9 183 50.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 4.4e-32 142.1 187 48.7
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.4e-32 142.1 183 50.8
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 9.9e-32 141.0 188 48.9
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.9e-31 139.4 184 52.2
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 3.8e-31 139.0 192 46.4
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 8.4e-31 137.9 189 49.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.4e-30 136.3 189 47.6
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-30 136.0 190 47.4
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-30 136.0 190 47.4
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.2e-30 136.0 190 47.4
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-30 135.6 189 47.1
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 4.2e-30 135.6 190 47.9
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 4.2e-30 135.6 190 47.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.2e-30 135.6 190 47.4
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 5.4e-30 135.2 194 46.9
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 7.1e-30 134.8 184 44.6
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 7.1e-30 134.8 180 48.3
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.3e-30 134.4 192 46.9
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-29 134.0 190 47.4
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.2e-29 134.0 190 47.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.1e-29 133.3 189 46.6
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.1e-29 133.3 189 46.6
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.1e-29 133.3 160 53.1
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-29 132.5 190 47.4
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-29 132.5 190 47.4
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.0e-29 131.7 195 43.6
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.7e-28 130.2 189 45.5
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-28 130.2 189 45.5
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 1.7e-28 130.2 190 45.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.0e-28 129.4 182 47.3
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 3.9e-28 129.0 162 54.3
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 8.7e-28 127.9 153 50.3
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.5e-27 127.1 164 51.8
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.9e-27 126.7 189 43.4
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.9e-27 126.7 187 43.9
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.9e-27 126.7 192 42.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 3.3e-27 125.9 192 46.9
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 3.3e-27 125.9 194 44.8
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 4.3e-27 125.6 180 48.3
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.6e-27 125.2 190 42.6
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.3e-26 124.0 162 48.1
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.3e-26 124.0 165 50.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-26 123.6 162 48.8
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.6e-26 123.6 193 44.0
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.8e-26 122.9 162 47.5
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.6e-26 122.5 194 45.4
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 3.6e-26 122.5 162 47.5
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-25 120.9 194 44.8
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 6.9e-25 118.2 165 46.7
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.5e-24 117.1 182 45.6
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 2.0e-24 116.7 189 44.4
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.4e-24 115.9 188 44.1
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.3e-23 114.0 173 42.8
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.7e-23 113.6 194 43.3
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.4e-23 111.3 193 42.0
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-22 110.9 179 46.9
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 9.3e-22 107.8 136 47.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-21 106.3 186 40.3
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.6e-21 105.5 177 39.5
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 3.0e-20 102.8 186 43.0
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.0e-20 102.8 193 38.3
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.9e-20 102.4 193 39.4
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 8.7e-20 101.3 189 38.1
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 8.7e-20 101.3 182 39.0
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.3e-19 99.4 186 39.2
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.3e-19 99.4 186 39.2
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 7.4e-19 98.2 186 38.7
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 7.4e-19 98.2 186 38.7
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 9.6e-19 97.8 194 41.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.6e-19 97.8 180 38.9
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 9.6e-19 97.8 193 33.2
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.7e-18 95.9 186 38.7
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 6.2e-18 95.1 188 37.8
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 2.6e-16 89.7 181 37.0
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.9e-14 83.6 191 36.1
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.4e-14 83.2 190 33.2
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.2e-14 82.4 187 35.3
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 5.5e-14 82.0 193 35.2
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.7e-13 79.7 147 40.8
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 1.1e-11 74.3 84 48.8
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.3e-11 72.8 47 74.5
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 4.3e-11 72.4 88 42.0
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 4.3e-11 72.4 173 34.7
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.6e-10 70.5 195 29.2
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 6.2e-10 68.6 161 30.4
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 6.2e-10 68.6 182 29.1
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 5.3e-09 65.5 189 29.6
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.9e-09 65.1 192 31.2
SHI24757 Sapria himalayana HOM05D004507 ORTHO05D004874 1.5e-08 63.9 69 50.7
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-08 63.2 111 33.3
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.4e-08 62.8 196 30.1
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 1.7e-07 60.5 192 30.2
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 2.9e-07 59.7 200 29.5
Os06g0653200 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 6.5e-07 58.5 167 30.5
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.4e-06 57.4 77 42.9
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.9e-06 57.0 197 26.9
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.5e-06 56.6 204 28.4
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 4.2e-06 55.8 41 65.9
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 7.1e-06 55.1 170 29.4


User provided reference genes

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