Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 3.7e-188 661.4 329 100.0
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 3.6e-103 379.0 332 60.8
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 7.6e-101 371.3 330 60.6
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 1.7e-100 370.2 330 60.0
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 6.7e-97 358.2 328 59.5
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 1.5e-96 357.1 288 62.5
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.6e-95 353.6 290 61.0
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 4.8e-95 352.1 315 59.7
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 6.9e-94 348.2 317 58.4
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 6.9e-94 348.2 336 57.4
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 3.4e-93 345.9 323 59.1
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 9.9e-93 344.4 323 57.3
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 2.2e-92 343.2 299 58.2
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 6.4e-92 341.7 329 57.4
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 8.4e-92 341.3 306 56.9
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 1.4e-91 340.5 310 57.4
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 2.4e-91 339.7 305 58.4
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 3.2e-91 339.3 310 57.1
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 3.2e-91 339.3 284 59.2
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 1.6e-90 337.0 334 56.0
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 4.6e-90 335.5 334 56.0
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 4.6e-90 335.5 330 55.5
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 4.6e-90 335.5 333 55.3
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 4.6e-90 335.5 325 56.3
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.3e-89 334.0 310 56.8
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.3e-89 333.2 324 57.7
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 2.3e-89 333.2 337 56.4
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 3.9e-89 332.4 305 57.7
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 5.1e-89 332.0 324 55.6
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 6.7e-89 331.6 282 59.6
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 8.7e-89 331.3 281 59.8
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 1.1e-88 330.9 324 56.8
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 1.1e-88 330.9 319 53.6
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 1.5e-88 330.5 269 62.5
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 5.6e-88 328.6 328 53.4
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 9.6e-88 327.8 306 56.9
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 1.3e-87 327.4 315 54.9
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 2.1e-87 326.6 294 58.2
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 4.8e-87 325.5 279 59.5
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 8.2e-87 324.7 284 58.5
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 2.4e-86 323.2 329 53.2
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 3.1e-86 322.8 330 51.5
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 1.2e-85 320.9 331 53.8
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 1.2e-85 320.9 307 54.4
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 5.8e-85 318.5 277 58.5
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 2.2e-84 316.6 331 52.0
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 3.8e-84 315.8 269 57.6
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 4.9e-84 315.5 272 58.1
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 3.2e-83 312.8 283 56.2
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 4.2e-83 312.4 302 53.6
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 4.2e-83 312.4 283 56.5
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 4.2e-83 312.4 295 54.2
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 5.5e-83 312.0 270 57.8
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 5.5e-83 312.0 309 53.1
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.2e-82 310.8 283 55.5
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 2.1e-82 310.1 302 55.3
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 2.1e-82 310.1 270 56.7
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 2.1e-82 310.1 276 59.4
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 6.0e-82 308.5 284 55.3
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 6.0e-82 308.5 303 53.8
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 6.0e-82 308.5 270 57.0
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 6.0e-82 308.5 304 53.3
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 1.0e-81 307.8 260 58.8
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 1.3e-81 307.4 292 55.8
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 4.3e-80 302.4 336 51.2
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 1.3e-79 300.8 311 51.4
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 2.2e-79 300.1 267 57.3
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 3.7e-79 299.3 329 50.8
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 6.3e-79 298.5 339 49.6
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 5.3e-78 295.4 268 56.3
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 5.3e-78 295.4 301 52.5
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 9.0e-78 294.7 267 56.2
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 1.5e-77 293.9 301 52.5
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 2.0e-77 293.5 265 55.5
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 3.4e-77 292.7 301 52.5
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 2.2e-76 290.0 331 48.6
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 8.5e-76 288.1 243 59.3
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 2.3e-73 280.0 248 56.5
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 9.7e-72 274.6 230 59.1
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 6.9e-70 268.5 328 48.5
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 1.2e-69 267.7 266 52.3
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 1.2e-69 267.7 268 51.9
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 2.0e-69 266.9 227 57.7
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 1.1e-67 261.2 228 58.8
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 1.1e-67 261.2 211 61.6
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 2.7e-66 256.5 221 60.2
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 5.1e-65 252.3 250 52.4
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 2.4e-62 243.4 228 57.0
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 2.4e-62 243.4 228 57.0
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 5.9e-61 238.8 262 46.2
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 3.2e-59 233.0 245 49.0
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 5.5e-59 232.3 124 84.7
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.0e-57 228.0 270 47.0
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 3.0e-57 226.5 276 48.6
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.1e-56 224.6 270 46.3
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 3.5e-45 186.4 210 48.1
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 1.1e-43 181.4 200 47.0
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 1.2e-40 171.4 177 49.2
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.2e-40 171.4 98 79.6
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 2.8e-39 166.8 257 36.6
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 5.4e-38 162.5 187 50.8
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 9.1e-38 161.8 255 38.8
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 5.9e-37 159.1 255 39.2
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 5.0e-36 156.0 238 43.7
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 9.5e-35 151.8 173 46.2
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.6e-34 151.0 108 70.4
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.1e-34 150.6 104 73.1
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.1e-34 150.6 108 70.4
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.8e-34 150.2 108 70.4
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 4.7e-34 149.4 191 42.9
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 1.0e-33 148.3 156 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 5.2e-33 146.0 256 36.3
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 1.1e-30 138.3 80 80.0
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 5.4e-30 136.0 89 74.2
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 1.2e-29 134.8 221 40.7
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 1.6e-29 134.4 89 71.9
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 2.9e-28 130.2 212 40.6
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 7.0e-22 109.0 183 36.1
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 3.5e-21 106.7 290 32.8
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 1.5e-19 101.3 76 59.2
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 3.3e-19 100.1 155 35.5
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 8.0e-18 95.5 87 54.0
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 2.6e-16 90.5 181 38.7
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 2.6e-16 90.5 162 35.2
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 4.4e-16 89.7 234 29.5
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 7.5e-16 89.0 181 38.1
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 1.4e-14 84.7 82 51.2
AL1G53920 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.6e-13 81.3 84 50.0
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-12 78.6 58 56.9
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 1.5e-11 74.7 227 23.8
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 1.9e-11 74.3 237 27.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 6.2e-10 69.3 109 33.9
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 5.2e-09 66.2 33 90.9
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 6.8e-09 65.9 243 25.5
BolC1t02395H Brassica oleracea HOM05D005733 ORTHO05D007442 3.4e-08 63.5 53 56.6
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.4e-08 63.2 58 51.7
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 5.8e-08 62.8 242 24.4
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 7.5e-08 62.4 97 39.2
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 9.9e-08 62.0 98 43.9
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 9.9e-08 62.0 115 33.0
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 9.9e-08 62.0 178 32.0
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.7e-07 61.2 132 31.8
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.2e-07 60.8 238 23.1
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 2.9e-07 60.5 266 24.1
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 2.9e-07 60.5 120 31.7
BcaC09g50520 Brassica carinata HOM05D005733 ORTHO05D007442 3.7e-07 60.1 33 78.8
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 3.7e-07 60.1 236 25.0
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.9e-07 59.7 98 38.8
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 6.4e-07 59.3 97 36.1
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 6.4e-07 59.3 97 38.1
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 6.4e-07 59.3 97 37.1
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 8.3e-07 58.9 97 34.0
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.1e-06 58.5 97 38.1
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.4e-06 58.2 97 37.1
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.9e-06 57.8 97 38.1
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.9e-06 57.8 97 36.1
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.4e-06 57.4 97 40.2
arahy.Tifrunner.gnm1.ann1.00M671 Arachis hypogaea HOM05D005733 ORTHO05D007442 2.4e-06 57.4 38 63.2
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 2.4e-06 57.4 33 75.8
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 3.2e-06 57.0 102 39.2
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 4.1e-06 56.6 94 37.2
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 5.4e-06 56.2 97 38.1
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 7.1e-06 55.8 265 24.9
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 7.1e-06 55.8 57 47.4
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 7.1e-06 55.8 73 37.0
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 7.1e-06 55.8 97 35.1
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 7.1e-06 55.8 97 37.1
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 7.1e-06 55.8 146 25.3
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 7.1e-06 55.8 234 26.1
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 9.2e-06 55.5 123 28.5


User provided reference genes

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