Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 4.6e-135 484.6 247 100.0
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.1e-128 463.4 246 94.3
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.9e-128 462.6 243 95.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 4.2e-128 461.5 247 93.9
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 7.1e-128 460.7 247 95.1
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 7.1e-128 460.7 243 95.5
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 3.5e-127 458.4 245 93.5
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.6e-127 458.0 247 94.7
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 4.6e-127 458.0 247 94.3
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.0e-126 456.8 247 93.1
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 1.0e-126 456.8 246 92.7
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 3.0e-126 455.3 247 93.5
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 3.9e-126 454.9 247 92.3
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 5.1e-126 454.5 247 92.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 92.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 92.3
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 4.3e-125 451.4 245 92.7
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 4.3e-125 451.4 245 91.8
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 4.3e-125 451.4 245 92.2
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 4.3e-125 451.4 245 92.2
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 5.7e-125 451.1 245 91.8
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 92.3
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 92.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.7e-125 451.1 245 91.4
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 91.9
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.2e-124 449.1 245 91.0
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.2e-124 449.1 245 92.7
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 90.7
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 2.2e-124 449.1 245 92.2
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 2.8e-124 448.7 245 91.8
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 91.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 4.8e-124 448.0 244 91.8
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 6.3e-124 447.6 248 92.3
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 89.9
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 91.1
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.9
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 8.2e-124 447.2 244 91.8
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-123 446.4 245 91.8
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 91.1
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.7
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 90.7
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 2.4e-123 445.7 244 91.4
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 91.1
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 91.1
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.1e-123 445.3 250 90.4
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 4.1e-123 444.9 246 91.9
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 4.1e-123 444.9 246 91.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 5.3e-123 444.5 245 91.8
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 90.7
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 90.7
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 90.7
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 89.5
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 9.0e-123 443.7 247 90.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.9
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.5
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.9
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.5
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.0e-122 442.6 245 90.2
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 89.9
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 89.9
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 2.6e-122 442.2 248 90.3
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.9
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 91.1
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 3.4e-122 441.8 246 89.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.9
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.7
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.5
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.5
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 89.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 89.1
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.0e-121 440.3 245 89.4
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 89.5
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.7e-121 439.5 247 89.1
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 89.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 91.0
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 89.9
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 89.5
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.9e-121 438.7 246 88.2
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.9
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.7
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.7
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.7
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.7
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.1
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.9
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.9
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 88.6
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.4e-120 436.4 245 89.4
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.4e-120 436.4 270 84.8
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 88.3
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 2.5e-120 435.6 244 90.2
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 88.3
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 4.2e-120 434.9 245 88.2
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 89.5
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 5.5e-120 434.5 248 88.3
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 9.4e-120 433.7 248 88.7
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.2e-119 433.3 248 88.7
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 4.6e-119 431.4 247 87.4
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 4.6e-119 431.4 248 87.9
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 6.1e-119 431.0 247 87.0
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 6.1e-119 431.0 235 91.9
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 7.9e-119 430.6 247 87.0
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 87.4
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 2.3e-118 429.1 245 86.9
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.5e-117 426.4 248 88.3
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 4.3e-117 424.9 286 79.0
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 7.4e-117 424.1 247 85.4
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 1.3e-116 423.3 248 87.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 2.2e-116 422.5 248 85.9
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 2.2e-116 422.5 290 77.2
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 6.3e-116 421.0 261 82.4
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 8.2e-116 420.6 248 86.7
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.4e-115 419.1 248 86.3
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 6.5e-113 411.0 247 85.0
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.6e-111 406.4 251 81.3
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 6.1e-111 404.4 249 82.3
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 2.3e-110 402.5 334 66.5
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.8e-108 395.6 245 81.2
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 2.8e-108 395.6 266 79.3
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.8e-107 392.9 251 78.9
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 7.0e-107 391.0 253 77.9
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 7.0e-107 391.0 211 92.4
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 7.0e-107 391.0 211 92.4
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 9.1e-107 390.6 223 87.9
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 1.2e-106 390.2 249 79.1
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 2.0e-106 389.4 380 58.4
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.5e-104 383.3 251 76.5
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 1.2e-103 380.2 213 89.2
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.4e-99 366.7 360 58.6
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 4.7e-95 351.7 245 74.7
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.9e-90 334.7 247 73.7
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.9e-88 329.7 198 87.9
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.2e-88 327.8 245 71.8
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.7e-82 309.3 165 92.7
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.3e-81 307.0 179 87.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.6e-79 298.9 172 89.5
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-79 298.5 168 88.1
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 6.1e-79 298.1 172 89.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.5e-69 266.9 280 54.3
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.5e-61 240.4 242 50.0
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.5e-56 223.8 138 81.2
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.6e-50 203.8 232 45.7
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.8e-46 190.3 247 51.4
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 2.4e-46 189.9 246 43.9
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 2.9e-44 183.0 102 87.3
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.7e-41 173.7 97 88.7
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 5.6e-40 168.7 199 53.8
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 7.6e-37 158.3 165 56.4
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 8.1e-31 138.3 139 56.8
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.9e-28 129.8 82 79.3
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.9e-27 127.1 82 80.5
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.4e-27 126.7 83 78.3
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 7.1e-27 125.2 84 73.8
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 6.0e-26 122.1 232 36.6
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 1.0e-25 121.3 212 41.5
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 2.9e-20 103.2 100 50.0
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 8.7e-17 91.7 53 88.7
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.4e-14 84.3 46 82.6
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.8e-14 84.0 52 86.5
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 4.1e-14 82.8 84 60.7
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 4.1e-14 82.8 51 82.4
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.5e-13 80.9 79 59.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.0e-13 80.5 51 76.5
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.2e-10 71.2 94 51.1
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 2.7e-10 70.1 106 48.1
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.3e-09 67.8 45 80.0
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.8e-07 60.1 90 48.9
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-06 57.8 36 72.2
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.4e-06 57.8 36 72.2
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 4.1e-06 56.2 36 69.4
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 6.9e-06 55.5 87 49.4


User provided reference genes

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