Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc75.104 Carica papaya HOM05D000011 ORTHO05D005888 3.5e-128 461.8 272 100.0
Cpa.g.sc75.105 Carica papaya HOM05D000011 ORTHO05D005888 3.1e-108 395.6 245 95.9
Atru.chr1.2405 Acer truncatum HOM05D000011 ORTHO05D005888 9.5e-49 198.0 247 47.8
Atru.chr1.2411 Acer truncatum HOM05D000011 ORTHO05D005888 9.5e-49 198.0 247 47.8
Potri.016G092600 Populus trichocarpa HOM05D000009 ORTHO05D005888 1.8e-47 193.7 247 47.8
Atru.chr1.2395 Acer truncatum HOM05D000011 ORTHO05D005888 3.7e-45 186.0 247 46.2
Ciclev10023688m.g Citrus clementina HOM05D000011 ORTHO05D005888 8.3e-45 184.9 247 46.6
Ciclev10023333m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.1e-44 184.5 247 46.2
Ciclev10023392m.g Citrus clementina HOM05D000011 ORTHO05D005888 3.5e-43 179.5 247 45.7
Ciclev10024458m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.0e-42 177.9 247 46.2
Ciclev10024145m.g Citrus clementina HOM05D000011 ORTHO05D005888 6.6e-42 175.3 247 44.5
TAR271G0001 Trochodendron aralioides HOM05D000011 ORTHO05D005888 6.6e-42 175.3 245 53.5
Potri.006G014400 Populus trichocarpa HOM05D000011 ORTHO05D005888 3.1e-39 166.4 251 42.2
Manes.05G097902 Manihot esculenta HOM05D000011 ORTHO05D005888 5.2e-39 165.6 248 41.9
Sabra06G0010200 Salix brachista HOM05D000011 ORTHO05D005888 2.0e-38 163.7 246 41.5
Sabra17G0115400 Salix brachista HOM05D000011 ORTHO05D005888 2.2e-37 160.2 248 41.5
TAR626G1165 Trochodendron aralioides HOM05D000011 ORTHO05D005888 8.4e-37 158.3 246 47.6
CANSAT56G3289 Cannabis sativa HOM05D000009 ORTHO05D005888 2.3e-34 150.2 251 42.6
RcHm_v2.0_Chr5g0001221 Rosa chinensis HOM05D000011 ORTHO05D005888 3.0e-34 149.8 248 45.2
Prupe.4G009300 Prunus persica HOM05D000011 ORTHO05D005888 1.9e-33 147.1 247 43.7
Duzib213G0151 Durio zibethinus HOM05D000011 ORTHO05D005888 1.8e-31 140.6 245 40.0
RcHm_v2.0_Chr3g0485861 Rosa chinensis HOM05D000011 ORTHO05D005888 6.9e-31 138.7 231 38.5
TWI38G1574 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 1.2e-30 137.9 247 42.1
RcHm_v2.0_Chr5g0001141 Rosa chinensis HOM05D000011 ORTHO05D005888 1.5e-30 137.5 233 40.3
RcHm_v2.0_Chr4g0391681 Rosa chinensis HOM05D000011 ORTHO05D005888 4.4e-30 136.0 247 43.3
CSS0025623 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D005888 5.8e-30 135.6 245 46.5
Dinv18562 Davidia involucrata HOM05D000011 ORTHO05D005888 1.3e-29 134.4 234 48.7
RcHm_v2.0_Chr4g0391451 Rosa chinensis HOM05D000011 ORTHO05D005888 1.3e-29 134.4 247 42.5
Gohir.D01G058800 Gossypium hirsutum HOM05D000011 ORTHO05D005888 2.2e-29 133.7 245 46.9
Thecc.07G058900 Theobroma cacao HOM05D000011 ORTHO05D005888 2.9e-29 133.3 245 39.2
Cc05_g05540 Coffea canephora HOM05D000011 ORTHO05D005888 6.4e-29 132.1 270 41.1
Gohir.A01G072000 Gossypium hirsutum HOM05D000011 ORTHO05D005888 1.1e-28 131.3 245 46.9
Gorai.002G079700 Gossypium raimondii HOM05D000011 ORTHO05D005888 2.4e-28 130.2 245 46.5
Potri.011G129800 Populus trichocarpa HOM05D000011 ORTHO05D005888 1.2e-27 127.9 244 37.7
RcHm_v2.0_Chr4g0391591 Rosa chinensis HOM05D000011 ORTHO05D005888 2.1e-27 127.1 140 50.7
Sopen07g026560 Solanum pennellii HOM05D000011 ORTHO05D005888 2.1e-27 127.1 245 45.7
CAN.G86.38 Capsicum annuum HOM05D000011 ORTHO05D005888 2.7e-27 126.7 245 43.7
COL.COLO4_09533 Corchorus olitorius HOM05D000011 ORTHO05D005888 2.7e-27 126.7 245 38.4
Peaxi162Scf00007g01510 Petunia axillaris HOM05D000011 ORTHO05D005888 1.0e-26 124.8 245 44.1
Solyc07g053010.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 1.3e-26 124.4 245 44.9
TWI38G2297 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 1.7e-26 124.0 239 42.3
Cc05_g05550 Coffea canephora HOM05D000011 ORTHO05D005888 2.3e-26 123.6 270 40.7
CAN.G86.40 Capsicum annuum HOM05D000011 ORTHO05D005888 3.0e-26 123.2 245 43.7
Solyc07g053020.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 3.0e-26 123.2 248 41.1
Sopen07g026570 Solanum pennellii HOM05D000011 ORTHO05D005888 3.9e-26 122.9 248 40.7
PGSC0003DMG400026161 Solanum tuberosum HOM05D000011 ORTHO05D005888 8.7e-26 121.7 245 43.7
Cc05_g05530 Coffea canephora HOM05D000011 ORTHO05D005888 1.9e-25 120.6 270 39.3
PGSC0003DMG400026187 Solanum tuberosum HOM05D000011 ORTHO05D005888 5.6e-25 119.0 248 39.9
CAN.G1467.4 Capsicum annuum HOM05D000011 ORTHO05D005888 3.6e-24 116.3 272 36.8
TAR617G0002 Trochodendron aralioides HOM05D000011 ORTHO05D005888 6.2e-24 115.5 258 42.6
TAR375G0870 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.8e-23 114.0 245 43.3
TAR629G3423 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.8e-23 114.0 245 43.3
FvH4_3g00820 Fragaria vesca HOM05D000011 ORTHO05D005888 2.6e-22 110.2 238 38.2
TAR471G0001 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.1e-20 104.8 252 42.5
AUR62017643 Chenopodium quinoa HOM05D000011 ORTHO05D005888 1.9e-20 104.0 247 43.3
CAN.G1467.1 Capsicum annuum HOM05D000011 ORTHO05D005888 1.6e-19 100.9 158 36.7
Manes.15G108800 Manihot esculenta HOM05D000011 ORTHO05D005888 2.7e-19 100.1 248 36.7
Aqoxy1G03782 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 4.6e-19 99.4 248 39.1
AT3G50950 Arabidopsis thaliana HOM05D000011 ORTHO05D005888 7.9e-19 98.6 244 31.1
BcaB01g00559 Brassica carinata HOM05D000011 ORTHO05D005888 1.3e-18 97.8 244 33.6
BcaC07g39565 Brassica carinata HOM05D000126 ORTHO05D005888 1.8e-18 97.4 244 33.2
C08p26210 Brassica napus HOM05D000126 ORTHO05D005888 1.8e-18 97.4 244 33.2
BolC8t50239H Brassica oleracea HOM05D000126 ORTHO05D005888 1.8e-18 97.4 244 33.2
BraA09t39865Z Brassica rapa HOM05D000126 ORTHO05D005888 1.8e-18 97.4 244 33.2
A09p44070 Brassica napus HOM05D000126 ORTHO05D005888 2.3e-18 97.1 244 33.2
Thhalv10010117m.g Eutrema salsugineum HOM05D000011 ORTHO05D005888 3.0e-18 96.7 244 35.2
Ah.01g001710 Amaranthus hybridus HOM05D000011 ORTHO05D005888 1.1e-17 94.7 247 37.7
CARHR160530 Cardamine hirsuta HOM05D000011 ORTHO05D005888 1.1e-17 94.7 247 36.0
CAN.G86.37 Capsicum annuum HOM05D000011 ORTHO05D005888 1.5e-17 94.4 142 39.4
AL5G31350 Arabidopsis lyrata HOM05D000011 ORTHO05D005888 1.9e-17 94.0 244 34.4
Sp5g11250 Schrenkiella parvula HOM05D000011 ORTHO05D005888 2.5e-17 93.6 244 36.5
Aa31LG4G19080 Aethionema arabicum HOM05D000011 ORTHO05D005888 9.6e-17 91.7 244 28.3
A09p50590 Brassica napus HOM05D000011 ORTHO05D005888 9.6e-17 91.7 244 35.2
Peaxi162Scf00418g00738 Petunia axillaris HOM05D000011 ORTHO05D005888 1.3e-16 91.3 246 37.4
Oeu023324.1 Olea europaea HOM05D000011 ORTHO05D005888 3.6e-16 89.7 245 35.1
TAR628G1202 Trochodendron aralioides HOM05D000011 ORTHO05D005888 3.6e-16 89.7 246 36.6
EL10Ac9g22899 Beta vulgaris HOM05D000011 ORTHO05D005888 6.2e-16 89.0 250 38.8
Cfa006904 Carpinus fangiana HOM05D000126 ORTHO05D005888 6.2e-16 89.0 251 37.5
CiPaw.08G139300 Carya illinoinensis HOM05D000011 ORTHO05D005888 1.1e-15 88.2 251 38.2
MBI05_g29539_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D002783 1.1e-15 88.2 245 38.8
AUR62012869 Chenopodium quinoa HOM05D000011 ORTHO05D005888 2.0e-14 84.0 253 39.9
PSO339G0683 Papaver somniferum HOM05D000011 ORTHO05D005888 1.3e-13 81.3 247 27.1
TAR376G0168 Trochodendron aralioides HOM05D000011 ORTHO05D005888 4.9e-13 79.3 246 37.4
Aqoxy7G03297 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 8.4e-13 78.6 247 37.7
CSS0027506 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D005888 1.1e-12 78.2 233 35.2
Sc10g0006840 Simmondsia chinensis HOM05D000011 ORTHO05D005888 1.9e-12 77.4 247 37.2
Carub.0005s1735 Capsella rubella HOM05D000011 ORTHO05D005888 2.4e-12 77.0 244 35.7
Haze_03939 Corylus avellana HOM05D000011 ORTHO05D005888 2.4e-12 77.0 246 35.8
CAN.G358.39 Capsicum annuum HOM05D000011 ORTHO05D005888 5.5e-12 75.9 246 34.6
QL06p035302 Quercus lobata HOM05D000011 ORTHO05D005888 1.6e-11 74.3 254 35.4
Hund08515 Selenicereus undatus HOM05D000011 ORTHO05D005888 6.0e-11 72.4 251 37.1
Nitab4.5_0000723g0210 Nicotiana tabacum HOM05D000011 ORTHO05D005888 7.9e-11 72.0 246 35.0
Duzib147G0382 Durio zibethinus HOM05D000011 ORTHO05D005888 1.0e-10 71.6 246 36.2
Solyc02g084890.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 1.0e-10 71.6 247 33.6
THA.LOC104819196 Tarenaya hassleriana HOM05D000011 ORTHO05D005888 1.0e-10 71.6 245 31.8
PSO384G5066 Papaver somniferum HOM05D000011 ORTHO05D005888 1.3e-10 71.2 269 27.9
Sopen02g029560 Solanum pennellii HOM05D000011 ORTHO05D005888 1.3e-10 71.2 246 33.7
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 1.8e-10 70.9 245 35.1
Nitab4.5_0003313g0020 Nicotiana tabacum HOM05D000011 ORTHO05D005888 2.3e-10 70.5 246 34.6
FAN26G0664 Fragaria x ananassa HOM05D000011 ORTHO05D005888 1.9e-09 67.4 245 33.5
PGSC0003DMG400003527 Solanum tuberosum HOM05D000011 ORTHO05D005888 1.9e-09 67.4 246 33.7
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 2.5e-09 67.0 246 35.0
Hma1.2p1_1297F.1_g274020 Hydrangea macrophylla HOM05D000011 ORTHO05D005888 2.5e-09 67.0 247 33.6
MBI02_g22866_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 2.5e-09 67.0 245 35.5
Atru.chr3.660 Acer truncatum HOM05D000011 ORTHO05D005888 3.3e-09 66.6 243 34.6
Atru.chr3.705 Acer truncatum HOM05D000126 ORTHO05D005888 3.3e-09 66.6 243 34.6
Manes.02G097400 Manihot esculenta HOM05D000011 ORTHO05D005888 3.3e-09 66.6 247 33.2
Sabra05G0098600 Salix brachista HOM05D000011 ORTHO05D005888 4.3e-09 66.2 246 34.6
Cc07_g09980 Coffea canephora HOM05D000011 ORTHO05D005888 7.4e-09 65.5 246 32.5
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 9.6e-09 65.1 246 35.4
Ciclev10024885m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.3e-08 64.7 245 33.9
FvH4_1g12710 Fragaria vesca HOM05D000011 ORTHO05D005888 1.6e-08 64.3 245 33.5
Potri.005G119800 Populus trichocarpa HOM05D000011 ORTHO05D005888 1.6e-08 64.3 246 35.0
RcHm_v2.0_Chr2g0100711 Rosa chinensis HOM05D000011 ORTHO05D005888 1.6e-08 64.3 245 32.2
CANSAT01G1164 Cannabis sativa HOM05D000011 ORTHO05D005888 2.1e-08 63.9 243 33.3
Nn6g31581 Nelumbo nucifera HOM05D000011 ORTHO05D005888 2.1e-08 63.9 265 33.2
FAN02G1023 Fragaria x ananassa HOM05D001899 ORTHO05D001858 2.8e-08 63.5 245 35.1
MD02G1141100 Malus domestica HOM05D000011 ORTHO05D005888 2.8e-08 63.5 245 31.8
Aqoxy1G03985 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 6.2e-08 62.4 170 46.5
Ciclev10024080m.g Citrus clementina HOM05D000011 ORTHO05D005888 6.2e-08 62.4 242 25.6
MBI02_g15402_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 8.1e-08 62.0 247 32.4
Prupe.7G160100 Prunus persica HOM05D000011 ORTHO05D005888 1.8e-07 60.8 264 33.7
Cc04_g12630 Coffea canephora HOM05D000011 ORTHO05D000018 2.4e-07 60.5 213 27.2
FAN05G3856 Fragaria x ananassa HOM05D001899 ORTHO05D001858 2.4e-07 60.5 245 35.9
CSS0047886 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.1e-07 60.1 266 33.8
MD10G1333100 Malus domestica HOM05D000011 ORTHO05D005888 3.1e-07 60.1 113 36.3
FvH4_6g22160 Fragaria vesca HOM05D001899 ORTHO05D001858 4.0e-07 59.7 244 35.2
Sabra06G0212000 Salix brachista HOM05D000009 ORTHO05D000008 4.0e-07 59.7 152 30.9
Gohir.A12G062700 Gossypium hirsutum HOM05D002044 ORTHO05D005888 5.3e-07 59.3 247 36.0
MBI15_g06360_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 9.0e-07 58.5 258 32.9
Nn7g36792 Nelumbo nucifera HOM05D000011 ORTHO05D000157 9.0e-07 58.5 261 24.1
TWI09G1527 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 9.0e-07 58.5 248 36.3
FAN14G0941 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.2e-06 58.2 244 34.8
TAR629G1104 Trochodendron aralioides HOM05D000009 ORTHO05D000008 1.5e-06 57.8 156 31.4
QL05p061342 Quercus lobata HOM05D000011 ORTHO05D000018 2.0e-06 57.4 257 24.5
HPP92_026492 Vanilla planifolia HOM05D000009 ORTHO05D000008 2.0e-06 57.4 268 25.7
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.6e-06 57.0 239 29.7
MBI15_g06353_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 2.6e-06 57.0 247 25.9
Manes.09G023000 Manihot esculenta HOM05D000009 ORTHO05D000008 2.6e-06 57.0 149 30.9
MBI15_g25908_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 3.4e-06 56.6 162 30.9
HPP92_014231 Vanilla planifolia HOM05D000009 ORTHO05D014246 3.4e-06 56.6 268 25.4
FvH4_6g51140 Fragaria vesca HOM05D000009 ORTHO05D000008 5.8e-06 55.8 156 33.3
Manes.09G022500 Manihot esculenta HOM05D000009 ORTHO05D000008 5.8e-06 55.8 149 30.9
TAR636G0085 Trochodendron aralioides HOM05D000009 ORTHO05D000008 5.8e-06 55.8 157 33.1
DCAR_018824 Daucus carota HOM05D000011 ORTHO05D000018 7.6e-06 55.5 153 30.7
Aqoxy4G00975 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 1.0e-05 55.1 148 31.1


User provided reference genes

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