Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc74.67 Carica papaya HOM05D008361 ORTHO05D010527 3.9e-97 358.2 191 100.0
Sopen08g028880 Solanum pennellii HOM05D008361 ORTHO05D010527 1.8e-46 189.9 197 54.3
Ciclev10024020m.g Citrus clementina HOM05D008361 ORTHO05D010527 4.1e-46 188.7 177 62.7
Duzib084G0204 Durio zibethinus HOM05D008361 ORTHO05D010527 1.7e-44 183.3 162 58.6
TWI81G0130 Tripterygium wilfordii HOM05D008361 ORTHO05D010527 8.5e-44 181.0 177 57.6
Rhsim07G0093200 Rhododendron simsii HOM05D008361 ORTHO05D010527 1.1e-43 180.6 186 56.5
QL12p017696 Quercus lobata HOM05D008361 ORTHO05D010527 2.5e-43 179.5 193 55.4
Gorai.004G209100 Gossypium raimondii HOM05D008361 ORTHO05D010527 9.3e-43 177.6 193 53.4
Thecc.03G273500 Theobroma cacao HOM05D008361 ORTHO05D010527 9.3e-43 177.6 189 55.6
PGR031G0074 Punica granatum HOM05D008361 ORTHO05D010527 3.6e-42 175.6 177 57.6
Atru.chr9.1564 Acer truncatum HOM05D008361 ORTHO05D010527 1.0e-41 174.1 174 55.2
Dinv38990 Davidia involucrata HOM05D008361 ORTHO05D010527 2.3e-41 172.9 194 53.1
vmacro13932 Vaccinium macrocarpon HOM05D008361 ORTHO05D010527 4.3e-40 168.7 191 52.4
Peaxi162Scf00714g00330 Petunia axillaris HOM05D008361 ORTHO05D010527 9.7e-40 167.5 209 48.8
Potri.001G102600 Populus trichocarpa HOM05D008361 ORTHO05D010527 1.3e-39 167.2 149 60.4
TAR629G3045 Trochodendron aralioides HOM05D008361 ORTHO05D010527 1.3e-39 167.2 189 54.5
Oeu029779.2 Olea europaea HOM05D008361 ORTHO05D010527 2.8e-39 166.0 192 51.6
Hma1.2p1_0514F.1_g169930 Hydrangea macrophylla HOM05D008361 ORTHO05D010527 3.7e-39 165.6 166 57.8
Sabra01G0077700 Salix brachista HOM05D008361 ORTHO05D010527 4.8e-39 165.2 149 59.7
THA.LOC104806378 Tarenaya hassleriana HOM05D008361 ORTHO05D010527 9.1e-38 161.0 195 52.8
Manes.02G025400 Manihot esculenta HOM05D008361 ORTHO05D010527 1.5e-37 160.2 173 56.1
Gohir.A12G225900 Gossypium hirsutum HOM05D008361 ORTHO05D010527 3.4e-37 159.1 149 55.0
GSVIVG01019832001 Vitis vinifera HOM05D008361 ORTHO05D010527 3.4e-37 159.1 169 56.2
AT4G11655 Arabidopsis thaliana HOM05D008361 ORTHO05D010527 4.5e-37 158.7 198 52.5
AL6G46250 Arabidopsis lyrata HOM05D008361 ORTHO05D010527 7.7e-37 157.9 196 51.5
CARHR254730 Cardamine hirsuta HOM05D008361 ORTHO05D010527 2.9e-36 156.0 198 51.5
Sp6g05820 Schrenkiella parvula HOM05D008361 ORTHO05D010527 2.9e-36 156.0 197 50.8
Gohir.D12G228400 Gossypium hirsutum HOM05D008361 ORTHO05D010527 3.8e-36 155.6 149 53.7
CANSAT21G0386 Cannabis sativa HOM05D008361 ORTHO05D010527 8.5e-36 154.5 178 49.4
Migut.A00801 Erythranthe guttata HOM05D008361 ORTHO05D010527 8.5e-36 154.5 173 50.9
Thhalv10028959m.g Eutrema salsugineum HOM05D008361 ORTHO05D010527 1.1e-35 154.1 200 49.5
BcaB01g01669 Brassica carinata HOM05D008361 ORTHO05D010527 1.2e-34 150.6 200 49.0
A09p27520 Brassica napus HOM05D008361 ORTHO05D010527 1.6e-34 150.2 199 48.2
BraA09t38320Z Brassica rapa HOM05D008361 ORTHO05D010527 1.6e-34 150.2 199 48.2
Gohir.A08G179550 Gossypium hirsutum HOM05D008361 ORTHO05D010527 1.6e-34 150.2 183 51.4
C09p34810 Brassica napus HOM05D008361 ORTHO05D010527 2.7e-34 149.4 199 48.2
BolC9t56327H Brassica oleracea HOM05D008361 ORTHO05D010527 2.7e-34 149.4 199 48.2
PSO478G1996 Papaver somniferum HOM05D008361 ORTHO05D010527 6.1e-34 148.3 193 46.1
Carub.0006s3074 Capsella rubella HOM05D008361 ORTHO05D010527 2.3e-33 146.4 199 49.2
Nn1g01412 Nelumbo nucifera HOM05D008361 ORTHO05D010527 2.3e-33 146.4 192 50.0
PSO782G5127 Papaver somniferum HOM05D008361 ORTHO05D010527 3.9e-33 145.6 193 45.6
Lsat_1_v5_gn_3_8380 Lactuca sativa HOM05D008361 ORTHO05D010527 4.1e-30 135.6 190 44.7
HanXRQChr05g0132741 Helianthus annuus HOM05D008361 ORTHO05D010527 2.0e-29 133.3 194 40.7
Gohir.D08G198300 Gossypium hirsutum HOM05D008361 ORTHO05D010527 8.5e-28 127.9 193 45.1
Eucgr.D01907 Eucalyptus grandis HOM05D008361 ORTHO05D010527 1.1e-27 127.5 145 51.7
CDE11G0059 Ceratophyllum demersum HOM05D008361 ORTHO05D010527 4.8e-23 112.1 173 41.6
Nitab4.5_0010472g0040 Nicotiana tabacum HOM05D008361 ORTHO05D010527 4.8e-23 112.1 128 50.8
CDE04G2251 Ceratophyllum demersum HOM05D008361 ORTHO05D010527 1.1e-22 110.9 184 41.8
Actinidia27400 Actinidia chinensis HOM05D008361 ORTHO05D010527 2.9e-20 102.8 131 47.3
ECA236G4060 Erigeron canadensis HOM05D008361 ORTHO05D010527 3.8e-20 102.4 130 47.7
MBI16_g06253_MAGBIO Magnolia biondii HOM05D008361 ORTHO05D010527 6.5e-20 101.7 110 53.6
Gorai.008G244500 Gossypium raimondii HOM05D008361 ORTHO05D010527 1.2e-18 97.4 100 53.0
ATR0317G124 Amborella trichopoda HOM05D008361 ORTHO05D010527 1.7e-15 87.0 194 37.1
SalBow1G8630 Salvia bowleyana HOM05D008361 ORTHO05D010527 4.5e-13 79.0 133 38.3
SEGI_30233 Sequoiadendron giganteum HOM05D001228 ORTHO05D003869 1.2e-10 70.9 150 36.0
MD04G1167600 Malus domestica HOM05D001228 ORTHO05D003869 8.0e-10 68.2 144 36.1
Lj1g0006910 Lotus japonicus HOM05D001228 ORTHO05D003869 1.0e-09 67.8 144 35.4
MD12G1180900 Malus domestica HOM05D001228 ORTHO05D003869 3.0e-09 66.2 144 34.7
VMungo1383G0475 Vigna mungo HOM05D001228 ORTHO05D003869 5.2e-09 65.5 144 36.8
CsaV3_1G001550 Cucumis sativus L. HOM05D001228 ORTHO05D002377 8.8e-09 64.7 135 32.6
Lalb_Chr19g0124121 Lupinus albus HOM05D001228 ORTHO05D003869 1.2e-08 64.3 143 35.7
ClCG06G016960 Citrullus lanatus HOM05D001228 ORTHO05D002377 2.0e-08 63.5 135 32.6
MELO3C017095.2 Cucumis melo HOM05D001228 ORTHO05D002377 2.0e-08 63.5 135 32.6
SEGI_01953 Sequoiadendron giganteum HOM05D001228 ORTHO05D003869 2.0e-08 63.5 146 34.9
Thecc.05G005700 Theobroma cacao HOM05D001228 ORTHO05D003869 2.0e-08 63.5 144 34.7
COL.COLO4_14441 Corchorus olitorius HOM05D001228 ORTHO05D003869 2.6e-08 63.2 144 36.1
SalBow5G1632 Salvia bowleyana HOM05D001228 ORTHO05D002377 4.4e-08 62.4 134 33.6
SalBow5G2380 Salvia bowleyana HOM05D001228 ORTHO05D002377 4.4e-08 62.4 134 33.6
TPR.G18651 Trifolium pratense HOM05D001228 ORTHO05D003869 4.4e-08 62.4 144 34.0
Glyma.06G183000 Glycine max HOM05D001228 ORTHO05D002377 7.5e-08 61.6 137 33.6
Ca_07712_v3 Cicer arietinum L. HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 34.0
Glyma.09G280300 Glycine max HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 34.0
Glyma.18G208700 Glycine max HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 33.3
Lalb_Chr12g0207431 Lupinus albus HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 35.4
Medtr7g071110 Medicago truncatula HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 34.7
Nitab4.5_0003850g0040 Nicotiana tabacum HOM05D001228 ORTHO05D003869 9.8e-08 61.2 147 30.6
TAR623G1791 Trochodendron aralioides HOM05D001228 ORTHO05D003869 9.8e-08 61.2 144 31.9
SEGI_06720 Sequoiadendron giganteum HOM05D001228 ORTHO05D002377 1.3e-07 60.8 160 33.1
Ciclev10012823m.g Citrus clementina HOM05D001228 ORTHO05D003869 1.7e-07 60.5 144 32.6
Gohir.A01G230132 Gossypium hirsutum HOM05D001228 ORTHO05D003869 1.7e-07 60.5 144 34.0
Gorai.002G266800 Gossypium raimondii HOM05D001228 ORTHO05D003869 1.7e-07 60.5 144 34.0
Prupe.6G285900 Prunus persica HOM05D001228 ORTHO05D003869 1.7e-07 60.5 144 34.0
Actinidia32547 Actinidia chinensis HOM05D001228 ORTHO05D003869 2.2e-07 60.1 144 34.7
Aqoxy4G02713 Aquilegia oxysepala HOM05D001228 ORTHO05D003869 2.2e-07 60.1 144 31.2
Solyc10g076300.2 Solanum lycopersicum HOM05D001228 ORTHO05D003869 2.8e-07 59.7 146 30.1
SGA_v2.0_scaffold240G44063 Striga asiatica HOM05D001228 ORTHO05D003869 2.8e-07 59.7 144 34.0
DCAR_018663 Daucus carota HOM05D001228 ORTHO05D003869 3.7e-07 59.3 142 32.4
Glyma.04G181900 Glycine max HOM05D001228 ORTHO05D002377 3.7e-07 59.3 135 31.9
Gohir.D01G220101 Gossypium hirsutum HOM05D001228 ORTHO05D003869 3.7e-07 59.3 144 34.0
MBI15_g01645_MAGBIO Magnolia biondii HOM05D001228 ORTHO05D003869 3.7e-07 59.3 179 31.8
Oeu016371.1 Olea europaea HOM05D001228 ORTHO05D002377 3.7e-07 59.3 134 32.1
Sopen10g027920 Solanum pennellii HOM05D001228 ORTHO05D003869 3.7e-07 59.3 146 29.5
SalBow1G6599 Salvia bowleyana HOM05D008361 ORTHO05D010527 4.8e-07 58.9 62 46.8
DCAR_028890 Daucus carota HOM05D001228 ORTHO05D003869 6.3e-07 58.5 153 30.7
DCAR_028892 Daucus carota HOM05D001228 ORTHO05D003869 6.3e-07 58.5 153 30.7
Gohir.A04G095900 Gossypium hirsutum HOM05D001228 ORTHO05D003869 6.3e-07 58.5 148 31.8
Eucgr.A00628 Eucalyptus grandis HOM05D001228 ORTHO05D003869 8.3e-07 58.2 144 33.3
FvH4_6g10520 Fragaria vesca HOM05D001228 ORTHO05D003869 8.3e-07 58.2 143 35.0
FAN14G4900 Fragaria x ananassa HOM05D001228 ORTHO05D003869 8.3e-07 58.2 143 35.0
Lj3g0022456 Lotus japonicus HOM05D001228 ORTHO05D003869 8.3e-07 58.2 144 31.9
Solyc03g114290.4 Solanum lycopersicum HOM05D001228 ORTHO05D002377 8.3e-07 58.2 142 32.4
Sopen03g033390 Solanum pennellii HOM05D001228 ORTHO05D002377 8.3e-07 58.2 142 32.4
PGSC0003DMG400011859 Solanum tuberosum HOM05D001228 ORTHO05D003869 8.3e-07 58.2 146 28.8
unitig_744.g24401 Utricularia gibba HOM05D001228 ORTHO05D002377 8.3e-07 58.2 148 33.1
BraA06t25904Z Brassica rapa HOM05D001228 ORTHO05D002377 1.1e-06 57.8 131 31.3
Duzib128G1021 Durio zibethinus HOM05D001228 ORTHO05D003869 1.1e-06 57.8 144 33.3
ECA236G4070 Erigeron canadensis HOM05D001410 ORTHO05D003969 1.1e-06 57.8 147 29.9
TPR.G1678 Trifolium pratense HOM05D001228 ORTHO05D002377 1.1e-06 57.8 135 31.9
unitig_27.g24875 Utricularia gibba HOM05D001228 ORTHO05D003869 1.1e-06 57.8 148 29.7
Migut.I00019 Erythranthe guttata HOM05D001228 ORTHO05D002377 1.4e-06 57.4 149 30.9
Gohir.D04G135700 Gossypium hirsutum HOM05D001228 ORTHO05D003869 1.4e-06 57.4 148 31.8
Peaxi162Scf00264g00838 Petunia axillaris HOM05D001228 ORTHO05D003869 1.4e-06 57.4 147 29.9
Phvul.008G090400 Phaseolus vulgaris HOM05D001228 ORTHO05D003869 1.4e-06 57.4 193 31.6
Psat3g123520 Pisum sativum HOM05D001228 ORTHO05D003869 1.4e-06 57.4 144 32.6
PGR031G3439 Punica granatum HOM05D001228 ORTHO05D003869 1.4e-06 57.4 144 31.2
SEGI_01255 Sequoiadendron giganteum HOM05D001228 ORTHO05D003869 1.4e-06 57.4 188 30.9
Haze_21094 Corylus avellana HOM05D001228 ORTHO05D003869 1.8e-06 57.0 144 31.2
Oeu057642.1 Olea europaea HOM05D001228 ORTHO05D003869 1.8e-06 57.0 144 29.9
Sopen09g007980 Solanum pennellii HOM05D001228 ORTHO05D003869 1.8e-06 57.0 144 31.9
BcaB02g09360 Brassica carinata HOM05D001228 ORTHO05D002377 2.4e-06 56.6 140 35.0
BcaC01g02524 Brassica carinata HOM05D001228 ORTHO05D002377 2.4e-06 56.6 131 30.5
BolC3t18646H Brassica oleracea HOM05D001228 ORTHO05D002377 2.4e-06 56.6 131 30.5
Cc00_g13880 Coffea canephora HOM05D001228 ORTHO05D003869 2.4e-06 56.6 152 32.2
FAN02G1495 Fragaria x ananassa HOM05D001228 ORTHO05D003869 2.4e-06 56.6 143 35.0
HanXRQChr16g0509781 Helianthus annuus HOM05D001228 ORTHO05D003869 2.4e-06 56.6 147 29.3
Lsat_1_v5_gn_8_103660 Lactuca sativa HOM05D001228 ORTHO05D003869 2.4e-06 56.6 147 28.6
Phvul.010G062800 Phaseolus vulgaris HOM05D001228 ORTHO05D003869 2.4e-06 56.6 145 32.4
Sed0022296 Sechium edule HOM05D001228 ORTHO05D003869 2.4e-06 56.6 149 30.9
PGSC0003DMG400011620 Solanum tuberosum HOM05D001228 ORTHO05D003869 2.4e-06 56.6 144 30.6
A06p29580 Brassica napus HOM05D001228 ORTHO05D002377 3.1e-06 56.2 131 30.5
C03p63920 Brassica napus HOM05D001228 ORTHO05D002377 3.1e-06 56.2 131 30.5
CDE06G1654 Ceratophyllum demersum HOM05D001228 ORTHO05D002377 3.1e-06 56.2 149 29.5
Gorai.012G119500 Gossypium raimondii HOM05D001228 ORTHO05D003869 3.1e-06 56.2 148 31.1
Nn2g13279 Nelumbo nucifera HOM05D001228 ORTHO05D003869 3.1e-06 56.2 142 28.9
Psat7g249480 Pisum sativum HOM05D001228 ORTHO05D003869 3.1e-06 56.2 144 32.6
Potri.016G128200 Populus trichocarpa HOM05D001228 ORTHO05D003869 3.1e-06 56.2 144 30.6
Prupe.5G174700 Prunus persica HOM05D001228 ORTHO05D002377 3.1e-06 56.2 130 29.2
TPR.G5191 Trifolium pratense HOM05D001228 ORTHO05D003869 3.1e-06 56.2 149 30.9
VMungo1309G1620 Vigna mungo HOM05D001228 ORTHO05D002377 3.1e-06 56.2 135 31.1
GSVIVG01030259001 Vitis vinifera HOM05D001228 ORTHO05D003869 3.1e-06 56.2 141 36.2
Cpa.g.sc124.52 Carica papaya HOM05D001228 ORTHO05D002377 4.1e-06 55.8 173 31.2
CiPaw.10G161500 Carya illinoinensis HOM05D001228 ORTHO05D003869 4.1e-06 55.8 144 31.9
FAN05G0078 Fragaria x ananassa HOM05D001228 ORTHO05D003869 4.1e-06 55.8 143 34.3
FAN05G2526 Fragaria x ananassa HOM05D001228 ORTHO05D003869 4.1e-06 55.8 143 34.3
FAN09G3644 Fragaria x ananassa HOM05D001228 ORTHO05D003869 4.1e-06 55.8 143 33.6
Sp4g18580 Schrenkiella parvula HOM05D001228 ORTHO05D002377 4.1e-06 55.8 138 31.9
Actinidia11545 Actinidia chinensis HOM05D001228 ORTHO05D003869 5.4e-06 55.5 145 30.3
CSS0036405 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 5.4e-06 55.5 144 29.9
RcHm_v2.0_Chr3g0461491 Rosa chinensis HOM05D001228 ORTHO05D003869 5.4e-06 55.5 144 34.0
SGA_v2.0_scaffold110G31183 Striga asiatica HOM05D001228 ORTHO05D003869 5.4e-06 55.5 144 32.6
CSS0038681 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 7.0e-06 55.1 144 29.9
Sc04g0001840 Simmondsia chinensis HOM05D001228 ORTHO05D002377 7.0e-06 55.1 135 28.9
Aa31LG11G870 Aethionema arabicum HOM05D001228 ORTHO05D002377 9.1e-06 54.7 134 31.3
BcaC02g11749 Brassica carinata HOM05D001228 ORTHO05D002377 9.1e-06 54.7 140 34.3
CARHR130620 Cardamine hirsuta HOM05D001228 ORTHO05D002377 9.1e-06 54.7 138 32.6
Glyma.01G128000 Glycine max HOM05D001228 ORTHO05D003869 9.1e-06 54.7 144 32.6
Hma1.2p1_0479F.1_g161710 Hydrangea macrophylla HOM05D001228 ORTHO05D003869 9.1e-06 54.7 141 32.6
Oeu026970.1 Olea europaea HOM05D001228 ORTHO05D003869 9.1e-06 54.7 144 29.9
QL07p033687 Quercus lobata HOM05D001228 ORTHO05D003869 9.1e-06 54.7 145 32.4
Solyc09g014993.1 Solanum lycopersicum HOM05D001228 ORTHO05D003869 9.1e-06 54.7 144 31.9
HPP92_001132 Vanilla planifolia HOM05D001228 ORTHO05D003869 9.1e-06 54.7 147 32.7


User provided reference genes

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