Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 3.4e-128 461.8 258 100.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.4e-62 243.0 214 63.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.8e-60 236.9 214 61.7
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.3e-60 236.5 215 62.8
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.9e-60 235.7 210 63.3
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 8.7e-60 234.6 211 62.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.1e-59 234.2 195 67.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 4.3e-59 232.3 240 60.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.3e-59 232.3 237 59.9
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.3e-58 230.7 238 56.7
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.1e-58 229.9 227 57.7
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 6.2e-58 228.4 252 55.6
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 8.1e-58 228.0 209 63.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.1e-57 227.6 206 63.1
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.1e-57 227.6 206 62.1
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.4e-57 227.3 240 57.1
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.1e-57 226.1 213 61.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 3.1e-57 226.1 213 62.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.1e-57 226.1 213 61.0
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.0e-57 225.7 220 60.5
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.2e-56 224.2 149 77.9
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.5e-56 223.8 240 55.4
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 3.4e-56 222.6 212 62.3
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 4.5e-56 222.2 213 62.0
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 7.6e-56 221.5 222 59.9
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 7.6e-56 221.5 216 59.7
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.0e-55 221.1 137 81.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.0e-55 221.1 212 60.8
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-55 220.3 191 63.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-55 220.3 191 63.4
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.7e-55 220.3 222 60.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.7e-55 220.3 197 60.4
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.2e-55 219.9 191 63.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 3.8e-55 219.2 214 60.7
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 3.8e-55 219.2 210 61.0
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.8e-55 219.2 172 67.4
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 4.9e-55 218.8 193 63.7
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 4.9e-55 218.8 193 63.7
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 4.9e-55 218.8 215 59.5
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 6.5e-55 218.4 216 59.7
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 6.5e-55 218.4 215 59.5
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-54 217.6 217 59.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.9e-54 216.9 186 65.1
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.9e-54 216.9 186 65.1
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.9e-54 216.9 211 59.2
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.5e-54 216.5 184 65.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.5e-54 216.5 184 65.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.5e-54 216.5 134 82.1
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 4.2e-54 215.7 217 59.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 5.5e-54 215.3 217 59.4
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 7.1e-54 214.9 199 62.8
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.3e-54 214.5 126 84.9
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.2e-53 214.2 215 57.7
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.2e-53 214.2 136 79.4
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.6e-53 213.8 216 58.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.7e-53 213.0 129 82.9
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 3.5e-53 212.6 217 59.4
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.5e-53 212.6 194 62.4
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 4.6e-53 212.2 243 55.6
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 6.0e-53 211.8 240 55.8
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 7.9e-53 211.5 206 59.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.0e-52 211.1 210 57.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.0e-52 211.1 205 59.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.0e-52 211.1 203 59.6
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.3e-52 210.7 237 55.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.8e-52 210.3 202 61.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.3e-52 209.9 239 53.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.9e-52 209.1 128 81.2
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.9e-52 209.1 224 55.8
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.9e-52 209.1 214 56.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.9e-52 209.1 221 57.9
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 5.1e-52 208.8 211 57.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 5.1e-52 208.8 159 68.6
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 8.7e-52 208.0 216 57.4
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.1e-51 207.6 214 56.1
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.5e-51 207.2 214 56.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.5e-51 207.2 129 78.3
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.9e-51 206.8 211 57.8
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.9e-51 206.8 247 54.3
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.9e-51 206.8 153 70.6
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.5e-51 206.5 129 79.1
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.5e-51 206.5 202 60.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 7.4e-51 204.9 194 60.8
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 7.4e-51 204.9 199 62.3
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.3e-50 204.1 239 53.1
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.6e-50 203.8 149 70.5
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.6e-50 203.8 245 53.1
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.1e-50 203.4 213 54.9
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 6.3e-50 201.8 171 60.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.1e-49 201.1 206 56.8
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.4e-49 200.7 138 73.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.8e-49 200.3 198 58.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.8e-49 200.3 178 61.8
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.4e-49 199.9 138 72.5
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.1e-49 199.5 152 67.1
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.3e-49 198.7 205 53.2
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 5.3e-49 198.7 201 61.2
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.3e-49 198.7 187 60.4
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.3e-49 198.7 187 60.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.9e-49 198.4 167 60.5
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.0e-49 198.0 204 58.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.5e-48 197.2 208 56.2
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.5e-48 197.2 185 60.0
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.0e-48 196.8 206 53.4
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 3.4e-48 196.1 206 53.4
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.4e-48 196.1 237 52.3
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 4.5e-48 195.7 126 77.0
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.9e-48 195.3 127 76.4
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 7.6e-48 194.9 207 55.1
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 1.3e-47 194.1 201 58.7
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.3e-47 194.1 145 67.6
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.2e-47 193.4 214 54.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.0e-47 192.2 125 76.0
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.0e-47 192.2 155 65.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.5e-47 191.8 210 55.2
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 8.4e-47 191.4 225 54.2
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-46 191.0 138 74.6
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-46 190.7 145 65.5
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-46 190.7 205 54.6
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.9e-46 190.3 127 74.8
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.9e-46 190.3 138 71.7
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.5e-46 189.9 207 56.5
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 4.2e-46 189.1 248 46.8
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.5e-46 188.7 158 64.6
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.6e-45 187.2 203 53.2
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.5e-45 186.0 145 64.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 6.1e-45 185.3 146 67.8
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.1e-45 185.3 212 55.7
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.1e-45 185.3 149 65.8
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.9e-45 184.9 235 51.5
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-44 183.7 205 58.0
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.3e-44 183.3 208 55.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.9e-44 182.6 208 53.4
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 6.7e-44 181.8 146 67.1
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.3e-43 179.5 125 72.0
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 5.7e-43 178.7 209 53.1
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.6e-42 177.2 237 51.5
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.3e-41 172.2 133 67.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 9.0e-41 171.4 225 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.5e-39 165.2 131 63.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 4.2e-38 162.5 182 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.6e-37 159.5 150 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.7e-36 155.2 154 56.5
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.1e-35 154.5 199 48.7
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 3.3e-35 152.9 127 64.6
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 9.7e-35 151.4 121 67.8
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 4.8e-34 149.1 189 47.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.9e-32 142.1 149 55.7
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.0e-31 141.4 95 80.0
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 7.9e-29 131.7 139 56.1
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.1e-21 107.1 194 43.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 8.0e-21 105.1 81 67.9
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.5e-19 100.9 74 68.9
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-18 97.4 125 49.6
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.3e-10 68.9 150 41.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.3e-07 61.2 122 36.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 4.2e-06 56.2 129 31.8


User provided reference genes

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