Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 5.9e-61 237.3 114 100.0
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 1.0e-20 103.6 69 66.7
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 3.3e-19 98.6 96 47.9
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 4.3e-19 98.2 97 46.4
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 7.3e-19 97.4 96 46.9
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.1e-18 95.9 89 47.2
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.8e-17 92.8 93 43.0
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 3.1e-17 92.0 96 42.7
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 3.1e-17 92.0 98 44.9
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.3e-17 91.3 96 45.8
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.5e-16 89.7 96 41.7
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.6e-16 89.0 96 42.7
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 2.6e-16 89.0 94 43.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.9e-16 87.0 93 44.1
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.9e-16 87.0 93 43.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 2.2e-15 85.9 85 51.8
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.2e-15 85.9 80 48.8
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.9e-15 85.5 95 42.1
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.8e-15 85.1 92 44.6
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 4.9e-15 84.7 94 42.6
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 4.9e-15 84.7 93 40.9
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.4e-15 84.3 96 40.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.4e-15 84.3 96 40.6
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 6.4e-15 84.3 94 46.8
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 6.4e-15 84.3 94 42.6
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 6.4e-15 84.3 92 41.3
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.4e-15 84.0 88 48.9
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-14 83.6 85 50.6
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.1e-14 83.6 93 43.0
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.1e-14 83.6 75 45.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.4e-14 83.2 90 45.6
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.9e-14 82.8 88 46.6
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.9e-14 82.8 83 43.4
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.4e-14 82.4 94 41.5
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.2e-14 81.6 101 38.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.2e-14 81.6 91 42.9
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.4e-14 81.3 93 41.9
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 7.1e-14 80.9 96 37.5
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 7.1e-14 80.9 96 38.5
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 7.1e-14 80.9 94 40.4
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.3e-14 80.5 88 45.5
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 9.3e-14 80.5 78 50.0
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.2e-13 80.1 101 41.6
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.6e-13 79.7 94 43.6
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-13 79.7 94 43.6
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-13 79.7 96 37.5
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 2.1e-13 79.3 98 35.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 2.1e-13 79.3 96 36.5
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.7e-13 79.0 93 38.7
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.7e-13 79.0 94 43.6
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 3.5e-13 78.6 98 36.7
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 3.5e-13 78.6 80 46.2
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.6e-13 78.2 89 40.4
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.6e-13 78.2 89 40.4
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 6.0e-13 77.8 73 45.2
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 7.9e-13 77.4 96 36.5
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.9e-13 77.4 86 41.9
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.3e-12 76.6 96 38.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.3e-12 76.6 96 39.6
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.3e-12 76.6 90 38.9
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 1.8e-12 76.3 89 46.1
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.3e-12 75.9 89 43.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.3e-12 75.9 92 35.9
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.9e-12 75.1 82 42.7
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.9e-12 75.1 94 39.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 3.9e-12 75.1 92 38.0
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 5.1e-12 74.7 93 43.0
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 6.7e-12 74.3 74 50.0
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.7e-12 74.3 89 40.4
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 8.7e-12 73.9 93 39.8
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 8.7e-12 73.9 91 41.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.1e-11 73.6 100 41.0
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.1e-11 73.6 95 44.2
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.1e-11 73.6 93 36.6
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-11 73.6 95 44.2
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.5e-11 73.2 87 35.6
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.9e-11 72.8 87 35.6
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.5e-11 72.4 90 38.9
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.5e-11 72.4 89 39.3
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.5e-11 72.4 96 39.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 2.5e-11 72.4 80 37.5
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 3.3e-11 72.0 94 38.3
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 4.3e-11 71.6 95 34.7
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.3e-11 71.6 95 34.7
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 7.4e-11 70.9 89 40.4
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.3e-10 70.1 91 38.5
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.1e-10 69.3 101 35.6
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 2.8e-10 68.9 90 37.8
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 2.8e-10 68.9 84 41.7
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.6e-10 68.6 83 43.4
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.6e-10 68.6 95 35.8
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 3.6e-10 68.6 95 41.1
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.2e-10 67.8 94 33.0
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 6.2e-10 67.8 93 36.6
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 8.1e-10 67.4 90 36.7
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.1e-09 67.0 98 36.7
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-09 67.0 97 35.1
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.8e-09 66.2 91 33.0
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.8e-09 66.2 95 34.7
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.8e-09 66.2 78 43.6
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.4e-09 65.9 91 41.8
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 2.4e-09 65.9 89 36.0
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 2.4e-09 65.9 83 39.8
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 3.1e-09 65.5 93 35.5
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 3.1e-09 65.5 89 40.4
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 3.1e-09 65.5 92 27.2
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.0e-09 65.1 96 28.1
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 5.3e-09 64.7 102 38.2
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 9.0e-09 63.9 92 33.7
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 9.0e-09 63.9 91 33.0
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.5e-08 63.2 72 41.7
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-08 63.2 64 51.6
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.5e-08 63.2 92 35.9
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.6e-08 62.4 73 43.8
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 3.4e-08 62.0 64 37.5
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 3.4e-08 62.0 73 43.8
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.5e-08 61.6 71 43.7
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.8e-08 61.2 71 42.3
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 7.6e-08 60.8 99 33.3
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.3e-07 60.1 99 33.3
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 1.7e-07 59.7 71 43.7
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 2.2e-07 59.3 91 34.1
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.9e-07 58.9 84 36.9
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 2.9e-07 58.9 84 36.9
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 3.8e-07 58.5 95 32.6
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 4.9e-07 58.2 92 33.7
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.9e-07 58.2 84 36.9
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.9e-07 58.2 84 36.9
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 2.4e-06 55.8 93 33.3
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 4.2e-06 55.1 57 50.9
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 7.1e-06 54.3 75 37.3
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 9.3e-06 53.9 52 50.0


User provided reference genes

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