Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.0e-122 443.4 219 100.0
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.6e-91 339.7 219 74.4
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 3.1e-90 335.5 217 73.7
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.3e-88 330.1 220 72.7
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 4.9e-88 328.2 200 78.0
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 6.4e-88 327.8 201 77.6
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 8.4e-88 327.4 210 74.8
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 1.9e-87 326.2 207 74.4
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 4.2e-87 325.1 207 75.8
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 7.1e-87 324.3 219 70.3
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.5e-86 322.0 219 69.9
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 6.0e-86 321.2 217 72.4
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.0e-85 320.5 219 70.8
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.3e-85 320.1 218 70.2
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 8.1e-83 310.8 213 71.4
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 8.1e-83 310.8 213 71.4
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.1e-82 310.5 198 74.7
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.8e-82 309.7 212 68.4
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.8e-82 309.7 208 73.1
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.2e-81 307.0 199 73.9
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.0e-81 306.2 211 70.1
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.3e-80 303.5 214 68.2
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.3e-80 303.5 201 72.1
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-80 303.1 206 69.4
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.4e-79 300.1 210 68.1
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.4e-79 300.1 210 68.1
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.9e-79 299.7 207 69.6
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.9e-79 299.7 212 66.5
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.9e-79 299.7 216 64.8
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 2.4e-79 299.3 210 65.2
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 3.2e-79 298.9 210 67.6
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 5.4e-79 298.1 208 68.3
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 5.4e-79 298.1 217 70.0
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 5.4e-79 298.1 217 66.4
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 7.1e-79 297.7 210 67.1
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 1.2e-78 297.0 211 66.4
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.5e-78 295.4 234 62.8
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 7.9e-78 294.3 212 64.2
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 1.7e-77 293.1 200 69.0
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 2.3e-77 292.7 215 64.7
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 3.9e-77 292.0 208 66.3
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 3.9e-77 292.0 205 67.8
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 3.9e-77 292.0 208 66.3
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 3.9e-77 292.0 218 63.3
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.1e-77 291.6 200 67.5
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.1e-77 291.6 200 67.5
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 6.6e-77 291.2 208 66.3
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 6.6e-77 291.2 211 65.9
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 8.7e-77 290.8 205 67.3
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 8.7e-77 290.8 209 66.0
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 1.1e-76 290.4 209 66.0
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.1e-76 290.4 205 68.8
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.5e-76 290.0 211 68.2
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.9e-76 289.7 196 69.4
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 3.3e-76 288.9 219 63.9
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.3e-76 288.9 205 68.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 4.3e-76 288.5 209 65.1
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.3e-76 288.5 206 67.0
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 4.3e-76 288.5 199 65.8
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 5.6e-76 288.1 205 67.3
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-75 287.0 207 66.7
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.3e-75 287.0 206 66.0
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.3e-75 287.0 202 68.8
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.6e-75 286.6 207 66.7
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.6e-75 286.6 207 66.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.6e-75 286.6 207 66.2
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.6e-75 286.6 218 64.7
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.8e-75 285.8 207 66.7
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.8e-75 285.8 199 67.3
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.8e-75 285.0 206 65.5
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 6.2e-75 284.6 215 66.0
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 8.1e-75 284.3 201 67.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 1.1e-74 283.9 205 67.8
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.1e-74 283.9 205 67.8
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.4e-74 283.5 210 67.6
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.8e-74 283.1 204 68.1
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.8e-74 283.1 215 62.3
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.8e-74 283.1 205 67.8
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 2.4e-74 282.7 199 69.3
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 3.1e-74 282.3 204 68.1
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 9.0e-74 280.8 217 63.6
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 2.6e-73 279.3 202 66.3
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.6e-73 279.3 203 67.0
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 2.6e-73 279.3 222 62.2
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 7.6e-73 277.7 197 68.5
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.7e-72 276.6 220 60.9
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.4e-71 273.5 199 62.8
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 3.2e-71 272.3 207 63.3
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 5.5e-71 271.6 200 66.5
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.3e-69 266.9 198 65.2
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 3.7e-67 258.8 200 64.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 6.9e-66 254.6 170 72.4
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 5.1e-61 238.4 170 66.5
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.5e-60 236.1 200 61.0
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.5e-60 236.1 200 61.0
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.6e-57 226.1 218 53.7
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.7e-56 223.4 169 64.5
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 2.2e-56 223.0 169 64.5
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.6e-54 216.9 166 64.5
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-51 206.8 169 58.0
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 5.3e-50 201.8 139 66.9
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 7.7e-49 198.0 233 47.2
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 1.3e-48 197.2 218 50.0
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 5.5e-47 191.8 143 63.6
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 2.3e-45 186.4 137 62.0
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 7.2e-39 164.9 105 70.5
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 4.7e-38 162.2 108 67.6
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 3.1e-34 149.4 117 60.7
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 2.0e-33 146.7 98 67.3
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 2.5e-31 139.8 223 36.3
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 8.8e-29 131.3 119 57.1
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 2.8e-27 126.3 110 55.5
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 3.1e-26 122.9 99 59.6
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 7.2e-23 111.7 109 55.0
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 7.2e-23 111.7 109 55.0
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 7.2e-23 111.7 109 55.0
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 7.2e-23 111.7 109 55.0
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 7.2e-23 111.7 109 55.0
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 5.4e-18 95.5 137 42.3
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.0e-16 91.3 75 53.3
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-12 76.6 52 65.4
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-12 75.9 53 64.2
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 5.7e-12 75.5 52 63.5
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 5.7e-12 75.5 56 60.7
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 5.7e-12 75.5 52 63.5
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 9.8e-12 74.7 52 63.5
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.1e-10 71.2 75 50.7
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.3e-08 63.5 39 69.2
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.9e-08 63.2 48 54.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 6.6e-08 62.0 39 66.7
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 8.6e-08 61.6 74 43.2
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 7.3e-07 58.5 39 61.5


User provided reference genes

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