Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 8.0e-208 726.9 369 100.0
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.2e-30 138.3 481 29.7
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.8e-26 124.4 438 28.3
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 6.9e-26 122.5 440 29.1
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 3.4e-25 120.2 441 27.0
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 5.8e-25 119.4 399 27.8
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.9e-24 117.1 417 27.8
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.9e-24 117.1 376 28.2
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 8.4e-24 115.5 411 29.2
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.5e-23 114.0 396 26.8
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 3.2e-23 113.6 381 28.6
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.2e-22 111.7 437 26.8
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.6e-22 111.3 444 29.5
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.6e-22 111.3 377 28.4
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.0e-21 108.6 457 26.5
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 1.3e-21 108.2 429 27.7
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.8e-21 107.8 438 29.5
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 5.1e-21 106.3 395 25.1
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.1e-20 105.1 463 27.0
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.9e-20 104.4 405 26.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 7.4e-20 102.4 297 29.0
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 7.4e-20 102.4 390 26.4
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-19 101.7 441 26.1
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 8.2e-19 99.0 391 27.1
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.1e-18 98.6 468 26.3
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.4e-18 98.2 372 28.2
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 2.4e-18 97.4 436 27.5
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 3.1e-18 97.1 428 24.3
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 4.1e-18 96.7 437 27.2
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 4.1e-18 96.7 418 25.6
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.5e-17 94.7 388 27.3
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 2.0e-17 94.4 370 27.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 2.0e-17 94.4 390 27.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 2.0e-17 94.4 459 24.4
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 2.6e-17 94.0 400 26.5
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 4.5e-17 93.2 390 27.4
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 7.6e-17 92.4 370 28.1
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 3.8e-16 90.1 420 24.8
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 5.0e-16 89.7 419 24.6
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 5.0e-16 89.7 440 25.7
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 6.5e-16 89.4 424 25.9
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-15 88.6 425 24.5
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 1.4e-15 88.2 387 27.9
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 1.9e-15 87.8 422 24.4
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 7.1e-15 85.9 400 24.8
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.2e-14 85.1 194 28.4
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.6e-14 84.7 433 25.4
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.9e-14 82.4 190 28.4
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.0e-13 82.0 226 27.9
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 1.0e-13 82.0 252 27.4
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 5.1e-13 79.7 527 24.1
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 6.7e-13 79.3 442 24.4
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 7.4e-12 75.9 363 25.1
Atru.chr3.1540 Acer truncatum HOM05D022167 ORTHO05D009787 1.2e-09 68.6 156 34.6
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 1.5e-09 68.2 137 32.1
Lj3g0021471 Lotus japonicus HOM05D010840 ORTHO05D009787 2.6e-09 67.4 292 26.0
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 4.5e-09 66.6 211 27.5
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 5.9e-09 66.2 137 32.1
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 1.3e-08 65.1 249 24.9
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 1.7e-08 64.7 160 26.2
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 5.0e-08 63.2 318 27.4
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 6.5e-08 62.8 327 23.9
TPR.G18857 Trifolium pratense HOM05D010840 ORTHO05D009787 1.9e-07 61.2 136 32.4
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 3.2e-07 60.5 84 39.3
Ca_01266_v3 Cicer arietinum L. HOM05D010840 ORTHO05D009787 3.2e-07 60.5 140 30.0
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 7.2e-07 59.3 147 31.3
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 9.4e-07 58.9 162 29.6
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 9.4e-07 58.9 132 33.3
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 1.2e-06 58.5 206 26.7
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.6e-06 58.2 237 26.6
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.6e-06 58.2 227 25.6
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 2.1e-06 57.8 134 30.6
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 2.7e-06 57.4 161 26.1
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 3.6e-06 57.0 209 25.8
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 4.6e-06 56.6 163 30.1


User provided reference genes

Program Settings