Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc71.47 Carica papaya HOM05D002525 ORTHO05D002727 3.6e-54 214.5 101 100.0
Thecc.04G183400 Theobroma cacao HOM05D002525 ORTHO05D002727 2.3e-16 89.0 48 81.2
Duzib151G0447 Durio zibethinus HOM05D002525 ORTHO05D002727 6.7e-16 87.4 48 79.2
Dinv22676 Davidia involucrata HOM05D002525 ORTHO05D002727 1.5e-15 86.3 48 81.2
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 5.7e-15 84.3 50 72.0
Prupe.1G185800 Prunus persica HOM05D002525 ORTHO05D002727 1.7e-14 82.8 48 75.0
CsaV3_4G003690 Cucumis sativus L. HOM05D002525 ORTHO05D002727 4.8e-14 81.3 50 68.0
Gohir.1Z049479 Gossypium hirsutum HOM05D002525 ORTHO05D002727 4.8e-14 81.3 48 75.0
Gohir.D05G326200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 4.8e-14 81.3 48 75.0
Gorai.009G350800 Gossypium raimondii HOM05D002525 ORTHO05D002727 4.8e-14 81.3 48 75.0
CSS0033500 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 8.2e-14 80.5 49 73.5
MD04G1036900 Malus domestica HOM05D002525 ORTHO05D002727 8.2e-14 80.5 47 78.7
AL5G41180 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 1.4e-13 79.7 72 55.6
Manes.04G049700 Manihot esculenta HOM05D002525 ORTHO05D002727 1.4e-13 79.7 48 75.0
Sabra02G0175900 Salix brachista HOM05D002525 ORTHO05D002727 1.4e-13 79.7 57 66.7
CSS0039690 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 1.8e-13 79.3 50 70.0
Sabra14G0115300 Salix brachista HOM05D002525 ORTHO05D002727 1.8e-13 79.3 48 72.9
GSVIVG01013557001 Vitis vinifera HOM05D002525 ORTHO05D002727 1.8e-13 79.3 48 70.8
Atru.chr3.1641 Acer truncatum HOM05D002525 ORTHO05D002727 3.1e-13 78.6 48 72.9
COL.COLO4_24369 Corchorus olitorius HOM05D002525 ORTHO05D002727 3.1e-13 78.6 44 77.3
CiPaw.01G105000 Carya illinoinensis HOM05D002525 ORTHO05D002727 4.1e-13 78.2 48 75.0
Sp5g03800 Schrenkiella parvula HOM05D002525 ORTHO05D002727 4.1e-13 78.2 44 79.5
Potri.002G230700 Populus trichocarpa HOM05D002525 ORTHO05D002727 5.3e-13 77.8 57 66.7
BraA07t30105Z Brassica rapa HOM05D002525 ORTHO05D002727 7.0e-13 77.4 72 54.2
Potri.014G151700 Populus trichocarpa HOM05D002525 ORTHO05D002727 7.0e-13 77.4 48 75.0
Actinidia35898 Actinidia chinensis HOM05D002525 ORTHO05D002727 9.1e-13 77.0 48 72.9
A07p24600 Brassica napus HOM05D002525 ORTHO05D002727 1.6e-12 76.3 72 54.2
C06p25940 Brassica napus HOM05D002525 ORTHO05D002727 1.6e-12 76.3 65 55.4
BolC6t37765H Brassica oleracea HOM05D002525 ORTHO05D002727 1.6e-12 76.3 65 55.4
TAR362G1149 Trochodendron aralioides HOM05D002525 ORTHO05D002727 1.6e-12 76.3 42 78.6
AT3G59300 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 2.0e-12 75.9 44 77.3
BcaC07g40321 Brassica carinata HOM05D002525 ORTHO05D002727 2.0e-12 75.9 72 52.8
BraA09t40600Z Brassica rapa HOM05D002525 ORTHO05D002727 2.0e-12 75.9 72 52.8
QL10p046294 Quercus lobata HOM05D002525 ORTHO05D002727 2.0e-12 75.9 48 70.8
Carub.0005s2604 Capsella rubella HOM05D002525 ORTHO05D002727 2.6e-12 75.5 44 77.3
RcHm_v2.0_Chr1g0335941 Rosa chinensis HOM05D002525 ORTHO05D002727 2.6e-12 75.5 45 75.6
RcHm_v2.0_Chr4g0408711 Rosa chinensis HOM05D002525 ORTHO05D002727 2.6e-12 75.5 45 75.6
C08p34380 Brassica napus HOM05D002525 ORTHO05D002727 3.5e-12 75.1 72 52.8
BolC8t51037H Brassica oleracea HOM05D002525 ORTHO05D002727 3.5e-12 75.1 72 52.8
Haze_00705 Corylus avellana HOM05D002525 ORTHO05D002727 3.5e-12 75.1 48 68.8
Thhalv10005960m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 3.5e-12 75.1 46 73.9
Cfa015788 Carpinus fangiana HOM05D002525 ORTHO05D002727 4.5e-12 74.7 63 55.6
ATR0743G277 Amborella trichopoda HOM05D002525 ORTHO05D002727 5.9e-12 74.3 43 76.7
CANSAT78G0936 Cannabis sativa HOM05D002525 ORTHO05D002727 5.9e-12 74.3 46 73.9
HanXRQChr14g0454141 Helianthus annuus HOM05D002525 ORTHO05D002727 5.9e-12 74.3 48 68.8
Hma1.2p1_0597F.1_g186370 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 5.9e-12 74.3 47 72.3
BcaC07g40463 Brassica carinata HOM05D002525 ORTHO05D002727 7.7e-12 73.9 64 56.2
A09p51610 Brassica napus HOM05D002525 ORTHO05D002727 1.0e-11 73.6 72 51.4
Ciclev10021185m.g Citrus clementina HOM05D002525 ORTHO05D002727 1.0e-11 73.6 46 73.9
THA.LOC104803553 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 1.0e-11 73.6 43 76.7
Aa31LG10G13660 Aethionema arabicum HOM05D002525 ORTHO05D002727 1.3e-11 73.2 63 54.0
Medtr5g090150 Medicago truncatula HOM05D002525 ORTHO05D002727 1.3e-11 73.2 48 64.6
CARHR169680 Cardamine hirsuta HOM05D002525 ORTHO05D002727 1.7e-11 72.8 44 72.7
Oeu050358.1 Olea europaea HOM05D002525 ORTHO05D002727 3.8e-11 71.6 58 58.6
FvH4_4g11600 Fragaria vesca HOM05D002525 ORTHO05D002727 5.0e-11 71.2 72 52.8
FAN12G1140 Fragaria x ananassa HOM05D002525 ORTHO05D002727 5.0e-11 71.2 72 52.8
FAN12G2385 Fragaria x ananassa HOM05D002525 ORTHO05D002727 5.0e-11 71.2 72 52.8
FAN17G1718 Fragaria x ananassa HOM05D002525 ORTHO05D002727 5.0e-11 71.2 94 44.7
ECA248G3080 Erigeron canadensis HOM05D002525 ORTHO05D002727 8.5e-11 70.5 48 66.7
Lsat_1_v5_gn_1_71460 Lactuca sativa HOM05D002525 ORTHO05D002727 1.9e-10 69.3 46 65.2
MELO3C017686.2 Cucumis melo HOM05D002525 ORTHO05D002727 2.5e-10 68.9 50 58.0
Eucgr.H00428 Eucalyptus grandis HOM05D002525 ORTHO05D002727 2.5e-10 68.9 47 66.0
FAN22G1390 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.2e-10 68.2 38 78.9
Lalb_Chr10g0106411 Lupinus albus HOM05D002525 ORTHO05D002727 7.2e-10 67.4 48 60.4
arahy.Tifrunner.gnm1.ann1.RBM2HP Arachis hypogaea HOM05D002525 ORTHO05D002727 9.4e-10 67.0 44 68.2
Ca_06229_v3 Cicer arietinum L. HOM05D002525 ORTHO05D002727 9.4e-10 67.0 49 57.1
LjContig00049g0021232 Lotus japonicus HOM05D002525 ORTHO05D002727 9.4e-10 67.0 48 66.7
vmacro00574 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 9.4e-10 67.0 57 61.4
arahy.Tifrunner.gnm1.ann1.8GR7XD Arachis hypogaea HOM05D002525 ORTHO05D002727 2.7e-09 65.5 44 68.2
TPR.G24735 Trifolium pratense HOM05D002525 ORTHO05D002727 2.7e-09 65.5 48 58.3
SalBow3G3324 Salvia bowleyana HOM05D002525 ORTHO05D002727 8.0e-09 63.9 48 58.3
Lalb_Chr17g0348081 Lupinus albus HOM05D002525 ORTHO05D002727 1.0e-08 63.5 48 56.2
MBI08_g18912_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 2.3e-08 62.4 40 70.0
Os01g0899500 Oryza sativa ssp. japonica HOM05D002525 ORTHO05D002727 2.3e-08 62.4 58 58.6
Zm00001eb144530 Zea mays HOM05D002525 ORTHO05D002727 6.7e-08 60.8 43 67.4
Nitab4.5_0002368g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 8.8e-08 60.5 49 61.2
Nitab4.5_0005682g0010 Nicotiana tabacum HOM05D002525 ORTHO05D002727 8.8e-08 60.5 49 61.2
Cc03_g11230 Coffea canephora HOM05D002525 ORTHO05D002727 1.5e-07 59.7 44 59.1
PGR142G2573 Punica granatum HOM05D002525 ORTHO05D002727 2.0e-07 59.3 63 57.1
PSO017G7186 Papaver somniferum HOM05D002525 ORTHO05D002727 2.6e-07 58.9 40 65.0
Peaxi162Scf00375g01017 Petunia axillaris HOM05D002525 ORTHO05D002727 3.3e-07 58.5 48 60.4
Sed0019908 Sechium edule HOM05D002525 ORTHO05D002727 3.3e-07 58.5 41 65.9
SGA_v2.0_scaffold12G06150 Striga asiatica HOM05D002525 ORTHO05D002727 5.7e-07 57.8 45 53.3
Glyma.14G033200 Glycine max HOM05D002525 ORTHO05D002727 7.5e-07 57.4 46 54.3
PSO675G4209 Papaver somniferum HOM05D002525 ORTHO05D002727 7.5e-07 57.4 40 60.0
Solyc06g073500.3 Solanum lycopersicum HOM05D002525 ORTHO05D002727 2.2e-06 55.8 49 57.1
Sopen06g029860 Solanum pennellii HOM05D002525 ORTHO05D002727 2.2e-06 55.8 49 57.1
PGSC0003DMG400027004 Solanum tuberosum HOM05D002525 ORTHO05D002727 2.2e-06 55.8 49 57.1
Migut.G01023 Erythranthe guttata HOM05D002525 ORTHO05D002727 4.8e-06 54.7 49 53.1


User provided reference genes

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