Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.3e-225 786.2 429 100.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 6.7e-174 614.4 432 75.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 6.5e-169 597.8 435 72.6
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 9.4e-168 594.0 443 73.6
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.6e-167 592.0 431 75.4
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.4e-166 590.1 438 74.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 8.8e-166 587.4 432 72.5
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.7e-164 583.2 402 75.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.4e-163 579.3 431 74.2
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.2e-162 577.0 437 74.8
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.5e-162 575.5 437 73.7
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 3.5e-162 575.5 435 72.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.5e-160 569.3 434 71.9
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 9.4e-160 567.4 432 76.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.0e-157 559.7 407 71.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.3e-156 557.0 430 71.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.7e-156 556.6 439 71.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.2e-156 556.2 439 72.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.8e-156 555.8 436 71.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 4.8e-156 555.1 431 72.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.8e-156 555.1 439 71.8
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.0e-155 551.2 432 67.6
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 7.0e-155 551.2 434 70.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 7.0e-155 551.2 434 70.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.5e-154 548.5 432 70.6
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 7.7e-154 547.7 429 72.5
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-153 546.6 434 72.6
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.2e-153 546.2 434 66.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.9e-153 545.8 440 69.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.9e-153 545.8 432 68.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.8e-153 545.4 405 70.4
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 5.0e-153 545.0 393 72.3
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 8.5e-153 544.3 440 69.3
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 8.5e-153 544.3 431 71.5
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 8.5e-153 544.3 435 68.7
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.2e-152 542.0 431 65.0
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.2e-152 542.0 430 67.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 9.4e-152 540.8 432 68.3
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.2e-151 540.4 435 71.7
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.6e-151 540.0 442 67.9
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 3.6e-151 538.9 436 70.6
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.6e-151 538.9 438 70.3
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.6e-151 538.9 391 71.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 4.7e-151 538.5 400 71.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 5.2e-150 535.0 432 69.0
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.5e-149 533.5 406 68.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.0e-149 533.1 432 64.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.4e-149 532.3 439 65.1
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.4e-149 532.3 431 64.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 4.8e-148 528.5 442 66.3
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.8e-148 528.5 442 66.3
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-147 527.3 442 66.5
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-147 527.3 390 70.5
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.8e-147 526.6 442 66.1
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 4.1e-147 525.4 433 64.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.7e-146 522.7 434 65.9
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 3.5e-146 522.3 433 66.7
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 3.5e-146 522.3 432 65.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.8e-145 518.8 433 67.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.1e-144 517.3 435 66.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 4.2e-144 515.4 431 65.7
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 9.5e-144 514.2 402 66.2
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.2e-143 513.8 439 65.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.6e-143 513.5 431 65.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.6e-143 512.3 434 65.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 6.1e-143 511.5 437 64.5
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.0e-142 510.8 394 65.5
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.0e-142 509.2 432 66.7
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.0e-142 509.2 431 66.4
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 3.0e-142 509.2 433 65.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.2e-141 507.3 409 65.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.2e-141 507.3 399 65.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-141 507.3 432 68.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.8e-141 504.2 435 64.1
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 9.8e-141 504.2 432 63.7
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.2e-140 503.1 433 64.2
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.2e-140 503.1 433 62.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.3e-140 501.5 437 63.4
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 6.3e-140 501.5 433 62.6
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.1e-139 500.7 440 66.8
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 3.1e-139 499.2 435 65.3
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 4.1e-139 498.8 430 68.1
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.2e-138 497.3 435 65.5
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.8e-138 494.6 432 63.9
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-137 493.4 429 64.3
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.3e-137 493.0 429 64.3
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.3e-137 493.0 429 64.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.9e-137 492.7 431 66.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.9e-137 492.7 400 63.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.9e-137 492.3 363 69.4
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 5.0e-137 491.9 400 63.5
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 8.6e-137 491.1 405 64.9
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.9e-136 490.0 429 65.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.3e-136 489.2 399 63.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 6.1e-135 485.0 443 62.1
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.6e-133 479.6 446 62.6
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 7.5e-133 478.0 414 62.3
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.2e-132 476.5 418 64.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-131 474.2 436 63.5
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.9e-131 473.4 436 63.3
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.1e-131 472.2 430 62.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.6e-130 470.3 433 62.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-130 468.4 436 64.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 7.8e-130 468.0 429 62.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 7.8e-130 468.0 439 63.6
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 3.0e-129 466.1 390 65.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.3e-128 462.6 437 63.2
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 4.4e-125 452.2 398 61.1
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 9.8e-125 451.1 429 59.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.9e-124 449.5 388 61.6
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-122 443.7 440 58.0
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.0e-122 441.8 440 57.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.5e-120 434.5 395 59.0
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 6.2e-119 431.8 322 67.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 5.6e-112 408.7 309 68.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 5.2e-110 402.1 416 53.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.2e-109 401.0 388 55.9
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.4e-107 393.3 388 57.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.4e-107 393.3 387 56.3
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 7.8e-106 388.3 389 56.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.5e-104 384.0 394 52.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.3e-87 327.8 428 46.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-85 320.5 336 55.4
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 4.8e-79 299.3 241 64.3
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 2.4e-70 270.4 223 60.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.2e-68 263.8 306 46.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 5.1e-65 252.7 235 58.7
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.7e-65 252.3 246 52.8
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 7.4e-64 248.8 400 38.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.2e-58 231.5 204 59.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.8e-57 227.6 194 75.3
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-55 221.5 162 70.4
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.8e-54 217.6 153 73.9
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.0e-52 211.8 194 68.0
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.0e-45 187.6 190 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 2.2e-44 184.1 311 35.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.9e-43 181.0 360 34.7
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.8e-18 97.4 115 50.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.8e-17 92.8 75 60.0
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.6e-12 75.9 75 54.7
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.3e-11 73.6 92 50.0
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.4e-09 68.6 151 34.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.4e-09 68.6 167 31.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 3.4e-08 63.9 36 69.4
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.7e-07 61.6 149 32.2
BolC5t29789H Brassica oleracea HOM05D005312 ORTHO05D006459 7.1e-06 56.2 32 65.6


User provided reference genes

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