Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 0.0e+00 1187.2 614 100.0
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 5.5e-254 880.9 622 74.3
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 1.8e-252 875.9 627 74.0
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 7.4e-251 870.5 644 71.6
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.4e-249 866.3 623 71.9
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 2.4e-249 865.5 623 71.4
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 1.6e-248 862.8 624 72.0
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 2.6e-248 862.1 623 71.4
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 4.5e-248 861.3 623 71.7
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 1.3e-247 859.8 628 72.0
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.5e-246 855.5 623 71.4
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 1.2e-245 853.2 620 71.6
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 3.0e-244 848.6 623 73.5
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 7.5e-243 844.0 627 70.0
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.6e-240 836.3 623 69.2
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 3.5e-240 835.1 615 71.4
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 5.9e-240 834.3 623 69.3
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 5.9e-240 834.3 623 69.3
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 2.9e-239 832.0 647 67.9
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 5.2e-236 821.2 628 68.6
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 9.8e-235 817.0 622 67.4
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 8.6e-231 803.9 631 66.9
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 1.1e-230 803.5 635 66.6
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 1.5e-230 803.1 627 67.0
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.2e-229 800.0 635 66.1
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 3.6e-229 798.5 623 67.4
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.0e-228 797.0 630 66.3
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 1.4e-228 796.6 622 65.6
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 4.0e-228 795.0 627 66.2
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.7e-226 789.6 627 65.6
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 4.9e-226 788.1 627 66.3
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 4.9e-226 788.1 622 65.3
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.8e-225 786.2 624 65.9
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 2.4e-225 785.8 624 66.0
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 5.4e-225 784.6 623 65.8
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 2.7e-224 782.3 627 65.7
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 5.9e-224 781.2 656 63.1
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.1e-222 776.9 627 64.9
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.1e-222 776.9 634 64.7
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 4.7e-221 771.5 624 65.1
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 6.1e-221 771.2 623 64.8
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.0e-220 770.4 622 65.0
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.0e-220 770.4 605 66.4
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 4.0e-220 768.5 549 73.2
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 6.8e-220 767.7 621 65.5
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 6.4e-218 761.1 624 64.6
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 1.1e-217 760.4 625 64.6
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 1.9e-217 759.6 624 64.4
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 1.0e-215 753.8 662 61.8
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.7e-215 753.1 622 63.8
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 3.0e-215 752.3 592 67.9
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 4.3e-214 748.4 618 61.7
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 5.2e-212 741.5 619 63.7
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 3.4e-211 738.8 735 56.6
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 4.4e-211 738.4 610 64.9
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 1.3e-210 736.9 621 63.4
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 1.7e-210 736.5 636 60.8
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 9.2e-209 730.7 625 63.0
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 3.5e-208 728.8 622 61.7
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 3.3e-206 722.2 623 60.5
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 3.1e-204 715.7 618 63.1
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 6.6e-199 698.0 623 58.1
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 2.1e-197 693.0 628 57.8
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 6.8e-196 688.0 622 58.5
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 2.1e-192 676.4 620 60.0
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 2.1e-192 676.4 670 57.9
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 7.8e-192 674.5 532 66.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 5.6e-190 668.3 624 57.2
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.2e-184 650.6 645 54.1
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 2.7e-184 649.4 629 57.7
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 5.3e-180 635.2 671 53.2
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 6.9e-180 634.8 623 56.2
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.9e-177 626.7 556 60.3
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 3.2e-177 625.9 629 55.5
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 5.6e-174 615.1 630 53.7
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 1.7e-170 603.6 613 53.5
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 2.9e-170 602.8 692 52.3
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 7.1e-169 598.2 457 65.9
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.7e-168 596.3 560 58.0
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 2.6e-163 579.7 702 46.6
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 1.2e-160 570.9 616 50.3
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.0e-159 567.8 589 56.0
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.1e-158 564.3 531 59.1
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 4.1e-156 555.8 589 55.0
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.2e-155 554.3 729 47.1
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 1.4e-148 530.8 568 54.4
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 2.6e-142 510.0 461 59.2
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 8.2e-141 505.0 454 59.7
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 2.9e-138 496.5 363 70.5
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 5.0e-138 495.7 319 77.7
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 3.2e-137 493.0 358 69.8
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 2.0e-134 483.8 604 45.2
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 3.8e-122 443.0 613 42.7
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 3.0e-119 433.3 606 41.3
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 3.0e-119 433.3 606 41.3
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 1.4e-116 424.5 288 76.0
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.3e-111 407.1 416 51.4
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 3.4e-102 376.7 326 64.4
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 1.3e-90 338.2 358 50.8
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.7e-85 321.2 539 36.7
HPP92_021631 Vanilla planifolia HOM05D001087 ORTHO05D005406 7.3e-81 305.8 340 50.3
Thhalv10017610m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.4e-76 290.8 304 54.9
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 1.3e-74 285.0 191 72.3
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 3.9e-74 283.5 213 67.1
BcaC05g25411 Brassica carinata HOM05D001087 ORTHO05D005406 9.0e-71 272.3 313 53.0
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 4.0e-63 246.9 642 28.3
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 3.5e-59 233.8 267 50.6
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.1e-57 228.8 178 64.6
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 7.4e-57 226.1 243 52.3
Peaxi162Scf00420g00935 Petunia axillaris HOM05D001087 ORTHO05D005406 9.6e-57 225.7 261 51.7
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.1e-47 195.7 270 44.1
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.1e-47 194.1 141 63.8
Nitab4.5_0005199g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.2e-45 188.0 272 41.9
Glyma.04G126700 Glycine max HOM05D001087 ORTHO05D005406 1.6e-43 181.8 145 64.1
Glyma.09G128151 Glycine max HOM05D001087 ORTHO05D005406 1.9e-41 174.9 127 68.5
Nitab4.5_0000519g0380 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.2e-35 155.6 130 61.5
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.0e-34 152.5 111 64.0
Nitab4.5_0000136g0080 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.0e-34 151.0 322 34.5
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.3e-33 147.5 158 50.6
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 2.2e-29 134.8 112 58.0
C05p12870 Brassica napus HOM05D001087 ORTHO05D005406 2.9e-29 134.4 149 50.3
BolC5t30034H Brassica oleracea HOM05D001087 ORTHO05D005406 2.9e-29 134.4 149 50.3
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.5e-20 103.6 75 66.7
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.2e-19 102.4 115 47.8
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 2.7e-19 101.3 73 65.8
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 8.0e-19 99.8 119 52.1
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 3.3e-17 94.4 80 65.0
Peaxi162Scf00420g00936 Petunia axillaris HOM05D001087 ORTHO05D005406 4.4e-17 94.0 81 55.6
Os11g0543800 Oryza sativa ssp. japonica HOM05D001087 ORTHO05D005406 3.7e-16 90.9 71 54.9
RcHm_v2.0_Chr7g0218031 Rosa chinensis HOM05D001087 ORTHO05D005406 1.4e-15 89.0 131 46.6
Psat0s3545g0040 Pisum sativum HOM05D001087 ORTHO05D005406 2.4e-15 88.2 78 62.8
RcHm_v2.0_Chr1g0366171 Rosa chinensis HOM05D001087 ORTHO05D017953 1.2e-11 75.9 119 38.7
Lj7C620T11 Lonicera japonica HOM05D001087 ORTHO05D005406 2.3e-10 71.6 60 61.7
BraA06t24070Z Brassica rapa HOM05D001087 ORTHO05D005406 5.7e-09 67.0 79 46.8
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 4.8e-08 63.9 58 51.7


User provided reference genes

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