Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 5.7e-173 610.9 329 100.0
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 2.8e-71 273.1 201 74.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.4e-70 270.8 212 70.3
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 4.5e-69 265.8 301 55.8
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 2.9e-68 263.1 164 81.7
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.5e-64 250.8 253 55.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 2.0e-64 250.4 303 54.1
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 3.3e-64 249.6 299 54.2
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.2e-63 246.9 213 61.5
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.2e-63 246.9 306 52.0
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.8e-63 246.5 151 81.5
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 4.8e-63 245.7 331 47.4
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 6.3e-63 245.4 329 49.8
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 4.1e-62 242.7 284 54.9
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 5.3e-62 242.3 325 50.8
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 7.0e-62 241.9 279 55.2
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 9.1e-62 241.5 315 51.4
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.0e-61 240.4 290 53.1
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.0e-61 240.4 330 46.1
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 3.4e-61 239.6 291 49.8
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 5.9e-61 238.8 251 58.2
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 7.7e-61 238.4 164 76.2
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 2.9e-60 236.5 276 51.4
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 2.9e-60 236.5 282 52.1
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 2.9e-60 236.5 183 68.3
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 3.8e-60 236.1 276 51.8
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 3.8e-60 236.1 303 50.2
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 3.8e-60 236.1 153 79.1
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 5.0e-60 235.7 157 73.9
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 5.0e-60 235.7 305 47.2
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 6.5e-60 235.3 279 53.4
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 8.5e-60 235.0 162 74.1
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 8.5e-60 235.0 300 51.3
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.9e-59 233.8 288 51.4
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.9e-59 233.8 154 75.3
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.5e-59 233.4 285 52.3
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 3.2e-59 233.0 293 51.2
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 4.2e-59 232.6 156 75.6
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 9.4e-59 231.5 293 46.1
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 1.2e-58 231.1 259 53.7
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.6e-58 230.7 150 78.0
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.6e-58 230.7 150 78.0
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.6e-58 230.7 150 78.0
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.6e-58 230.7 150 78.0
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 1.6e-58 230.7 208 60.6
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 2.1e-58 230.3 280 53.2
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.1e-58 230.3 307 47.2
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.7e-58 229.9 227 57.3
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.6e-58 229.6 306 48.0
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 4.7e-58 229.2 151 76.8
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 6.1e-58 228.8 287 47.0
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 8.0e-58 228.4 296 47.0
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 1.8e-57 227.3 322 45.3
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 1.8e-57 227.3 218 56.9
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 2.3e-57 226.9 280 52.5
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.9e-57 226.1 257 52.9
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 5.2e-57 225.7 256 52.7
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 6.7e-57 225.3 145 77.9
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 6.7e-57 225.3 312 46.2
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 8.8e-57 224.9 272 52.2
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.5e-56 224.2 321 45.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 5.7e-56 222.2 336 48.2
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 1.7e-55 220.7 296 49.3
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 2.8e-55 219.9 348 44.3
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 4.8e-55 219.2 285 49.5
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 4.8e-55 219.2 300 48.7
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 4.8e-55 219.2 144 76.4
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 1.1e-54 218.0 158 70.3
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.4e-54 217.6 154 70.1
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.8e-54 217.2 222 55.0
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.8e-54 217.2 310 47.7
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.8e-54 217.2 310 47.7
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.8e-54 217.2 309 48.5
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 5.3e-54 215.7 308 47.1
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 5.3e-54 215.7 157 72.0
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 5.3e-54 215.7 157 72.0
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 9.1e-54 214.9 246 53.7
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 2.6e-53 213.4 313 44.7
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 7.7e-53 211.8 188 62.8
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 7.7e-53 211.8 188 62.8
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.3e-52 211.1 134 78.4
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 2.2e-52 210.3 302 45.0
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 2.9e-52 209.9 304 47.4
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 5.0e-52 209.1 243 52.7
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 5.0e-52 209.1 154 68.8
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.2e-51 206.5 247 50.6
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 5.5e-51 205.7 157 67.5
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 9.4e-51 204.9 157 65.6
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 9.4e-51 204.9 261 49.4
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.6e-50 204.1 342 44.4
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 3.6e-50 203.0 269 50.2
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 8.0e-50 201.8 297 42.4
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.0e-49 201.4 132 76.5
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.0e-49 201.4 134 73.9
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.0e-49 201.4 142 73.2
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 4.0e-49 199.5 140 70.0
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 5.2e-49 199.1 257 52.1
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 1.2e-48 198.0 156 67.3
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-48 197.2 165 66.1
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 2.6e-48 196.8 212 52.8
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.7e-48 195.7 245 48.6
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 5.7e-48 195.7 218 52.3
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.5e-48 195.3 162 63.0
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.7e-47 194.1 285 47.0
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 2.2e-47 193.7 314 41.7
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 6.3e-47 192.2 347 40.3
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 6.3e-47 192.2 204 53.4
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 8.2e-47 191.8 324 44.1
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 3.1e-46 189.9 157 62.4
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 4.1e-46 189.5 219 53.9
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.3e-46 189.1 132 72.7
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.0e-46 188.7 164 61.0
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.0e-46 188.7 164 61.0
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 1.2e-45 188.0 150 66.0
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.2e-45 188.0 224 52.7
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.0e-45 187.2 158 64.6
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 3.8e-44 183.0 136 72.8
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.8e-44 183.0 134 69.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 7.2e-43 178.7 200 52.5
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 1.2e-42 177.9 323 39.0
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 8.0e-42 175.3 226 47.8
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.0e-41 174.9 284 45.4
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 6.8e-41 172.2 289 42.2
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.3e-39 165.2 138 64.5
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 2.4e-38 163.7 132 65.2
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 1.0e-36 158.3 147 57.1
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 7.2e-35 152.1 144 61.1
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 4.4e-32 142.9 121 61.2
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.7e-31 139.8 100 74.0
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 3.7e-31 139.8 138 54.3
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 4.5e-29 132.9 204 44.1
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 3.3e-27 126.7 132 50.0
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 7.3e-27 125.6 90 71.1
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.8e-26 123.6 164 44.5
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 7.8e-21 105.5 136 47.1
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 1.2e-18 98.2 117 45.3
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 2.6e-16 90.5 83 60.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 1.7e-15 87.8 133 36.8
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.9e-15 87.0 91 52.7
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 4.1e-14 83.2 100 51.0
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 1.7e-12 77.8 229 31.4
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.9e-11 74.3 170 31.2
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 3.3e-11 73.6 57 63.2
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 1.6e-10 71.2 140 35.7


User provided reference genes

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