Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.265 Carica papaya HOM05D000454 ORTHO05D002637 7.2e-39 164.5 168 100.0
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 2.0e-17 93.2 73 65.8
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 2.7e-17 92.8 73 63.0
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 3.5e-17 92.4 73 64.4
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 1.7e-16 90.1 73 60.3
Atru.chr7.2114 Acer truncatum HOM05D000454 ORTHO05D002637 1.7e-16 90.1 73 60.3
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.3e-16 89.7 72 61.1
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 5.0e-16 88.6 71 63.4
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 2.5e-15 86.3 73 57.5
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 3.3e-15 85.9 73 56.2
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 5.6e-15 85.1 67 56.7
GSVIVG01035638001 Vitis vinifera HOM05D000454 ORTHO05D002637 1.2e-14 84.0 71 62.0
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.6e-14 83.6 72 56.9
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.6e-14 83.6 72 55.6
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 1.0e-13 80.9 71 59.2
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 2.3e-13 79.7 73 52.1
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.3e-13 79.7 73 52.1
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 2.3e-13 79.7 74 55.4
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 3.0e-13 79.3 73 49.3
TAR626G1687 Trochodendron aralioides HOM05D000454 ORTHO05D002637 3.0e-13 79.3 71 57.7
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 4.0e-13 79.0 72 52.8
THA.LOC104799197 Tarenaya hassleriana HOM05D000454 ORTHO05D002637 5.2e-13 78.6 75 53.3
TAR636G2176 Trochodendron aralioides HOM05D000454 ORTHO05D002637 5.2e-13 78.6 71 56.3
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.5e-12 77.0 73 52.1
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 2.0e-12 76.6 69 53.6
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 2.6e-12 76.3 73 57.5
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 4.4e-12 75.5 73 52.1
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 5.7e-12 75.1 67 56.7
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 5.7e-12 75.1 67 55.2
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 7.5e-12 74.7 71 49.3
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 1.7e-11 73.6 73 50.7
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 2.2e-11 73.2 71 53.5
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 2.9e-11 72.8 72 45.8
Solyc08g066760.4 Solanum lycopersicum HOM05D000454 ORTHO05D002637 2.9e-11 72.8 73 53.4
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 2.9e-11 72.8 72 54.2
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 4.9e-11 72.0 73 45.2
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 6.4e-11 71.6 74 55.4
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 6.4e-11 71.6 73 47.9
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 8.3e-11 71.2 73 46.6
Atru.chr1.3491 Acer truncatum HOM05D000454 ORTHO05D002637 1.1e-10 70.9 73 46.6
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 1.1e-10 70.9 73 45.2
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.1e-10 70.9 73 43.8
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 1.1e-10 70.9 71 49.3
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 1.1e-10 70.9 72 52.8
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.4e-10 70.5 73 45.2
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 1.4e-10 70.5 71 52.1
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 1.4e-10 70.5 71 52.1
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.8e-10 70.1 72 48.6
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 3.2e-10 69.3 69 53.6
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 4.1e-10 68.9 73 45.2
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 4.1e-10 68.9 73 50.7
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 5.4e-10 68.6 70 48.6
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 5.4e-10 68.6 73 46.6
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 5.4e-10 68.6 68 52.9
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.2e-10 67.8 73 47.9
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 9.2e-10 67.8 67 52.2
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 9.2e-10 67.8 71 45.1
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 9.2e-10 67.8 73 45.2
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 9.2e-10 67.8 68 52.9
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.2e-09 67.4 73 46.6
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 1.2e-09 67.4 71 49.3
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.6e-09 67.0 73 50.7
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 1.6e-09 67.0 73 46.6
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.6e-09 67.0 73 46.6
PGSC0003DMG400004319 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.6e-09 67.0 68 51.5
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.0e-09 66.6 72 45.8
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.0e-09 66.6 67 47.8
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 2.0e-09 66.6 71 47.9
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 2.0e-09 66.6 77 50.6
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.7e-09 66.2 70 48.6
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 2.7e-09 66.2 73 46.6
Lj8C587G6 Lonicera japonica HOM05D000454 ORTHO05D002637 3.5e-09 65.9 67 50.7
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 3.5e-09 65.9 69 50.7
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 3.5e-09 65.9 70 47.1
Atru.chr1.3486 Acer truncatum HOM05D000454 ORTHO05D002637 5.9e-09 65.1 51 54.9
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 5.9e-09 65.1 71 46.5
Lj8C586G6 Lonicera japonica HOM05D000454 ORTHO05D002637 5.9e-09 65.1 71 45.1
Peaxi162Scf00161g00121 Petunia axillaris HOM05D000454 ORTHO05D002637 5.9e-09 65.1 73 50.7
PGSC0003DMG400004320 Solanum tuberosum HOM05D000454 ORTHO05D030671 5.9e-09 65.1 68 50.0
Lj8C577G4 Lonicera japonica HOM05D000454 ORTHO05D002637 7.8e-09 64.7 71 46.5
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 1.0e-08 64.3 73 46.6
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.0e-08 64.3 73 46.6
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.0e-08 64.3 68 48.5
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 1.0e-08 64.3 68 47.1
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 1.3e-08 63.9 73 43.8
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 1.7e-08 63.5 73 46.6
Dinv30455 Davidia involucrata HOM05D000454 ORTHO05D002637 5.0e-08 62.0 70 42.9
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 5.0e-08 62.0 71 49.3
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 5.0e-08 62.0 73 43.8
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 6.6e-08 61.6 69 46.4
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.1e-07 60.8 70 51.4
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 1.5e-07 60.5 72 43.1
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 1.5e-07 60.5 72 48.6
Thecc.06G097000 Theobroma cacao HOM05D000454 ORTHO05D002637 1.5e-07 60.5 70 47.1
arahy.Tifrunner.gnm1.ann1.A9YK01 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.5e-07 59.7 73 41.1
arahy.Tifrunner.gnm1.ann1.N3KGB9 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.5e-07 59.7 73 41.1
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 3.3e-07 59.3 72 47.2
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 3.3e-07 59.3 70 41.4
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 4.3e-07 58.9 67 46.3
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 4.3e-07 58.9 73 41.1
TPR.G27663 Trifolium pratense HOM05D000454 ORTHO05D002637 4.3e-07 58.9 71 43.7
Lj8A605G12 Lonicera japonica HOM05D000454 ORTHO05D002637 5.6e-07 58.5 71 43.7
Duzib192G1039 Durio zibethinus HOM05D000454 ORTHO05D002637 9.5e-07 57.8 63 50.8
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 9.5e-07 57.8 68 45.6
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 9.5e-07 57.8 71 43.7
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 9.5e-07 57.8 54 48.1
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 9.5e-07 57.8 71 46.5
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 1.2e-06 57.4 72 40.3
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.2e-06 57.4 72 43.1
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 1.6e-06 57.0 71 42.3
ATR1149G077 Amborella trichopoda HOM05D000480 ORTHO05D000313 2.1e-06 56.6 73 42.5
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 2.8e-06 56.2 69 43.5
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 3.6e-06 55.8 72 40.3
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 3.6e-06 55.8 69 42.0
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 4.7e-06 55.5 70 42.9
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 6.2e-06 55.1 71 39.4


User provided reference genes

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