Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.3e-233 811.2 378 100.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 3.9e-194 681.4 378 81.2
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.8e-194 680.2 378 80.4
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 8.8e-194 680.2 378 82.0
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.0e-193 679.1 378 81.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.6e-193 678.7 378 80.2
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 2.6e-193 678.7 378 81.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.4e-193 677.9 378 80.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.3e-192 676.4 378 80.2
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 4.8e-192 674.5 378 79.9
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 6.3e-192 674.1 378 79.9
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 6.3e-192 674.1 378 79.9
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.4e-191 672.2 378 80.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.1e-191 671.8 380 79.5
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 5.3e-191 671.0 380 79.7
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 5.3e-191 671.0 378 81.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 9.1e-191 670.2 378 79.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.6e-190 669.5 378 78.8
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 2.0e-190 669.1 379 79.9
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.9e-190 667.5 378 79.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 5.9e-190 667.5 378 78.8
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.0e-189 666.8 379 78.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 2.2e-189 665.6 380 79.2
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.9e-189 665.2 379 79.2
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.5e-189 663.7 378 79.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.1e-188 663.3 378 77.0
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-188 663.3 378 79.6
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-188 662.9 378 79.9
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.9e-188 662.5 378 77.2
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.9e-188 662.5 378 78.8
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.5e-188 662.1 378 78.0
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.2e-188 661.8 378 77.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 4.2e-188 661.4 379 79.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.2e-188 661.4 381 78.5
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.2e-188 661.4 381 78.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 9.4e-188 660.2 379 77.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.2e-187 659.8 378 79.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.6e-187 659.4 378 77.8
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.1e-187 659.1 379 77.6
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 6.1e-187 657.5 379 77.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.0e-186 655.2 378 78.0
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 8.8e-186 653.7 378 76.5
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.5e-185 652.9 378 77.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.4e-185 651.4 378 75.9
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 9.7e-185 650.2 395 75.7
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 9.7e-185 650.2 378 77.2
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.3e-184 649.8 378 77.5
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.3e-184 649.8 380 76.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.7e-184 649.4 378 76.7
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.2e-184 649.0 378 77.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.8e-184 647.9 378 75.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 8.2e-184 647.1 378 76.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 8.2e-184 647.1 378 75.9
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.1e-183 646.7 431 69.8
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.1e-183 646.7 378 77.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.8e-183 646.0 378 75.9
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.8e-183 646.0 378 77.2
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 4.1e-183 644.8 378 74.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 5.3e-183 644.4 378 75.7
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 5.3e-183 644.4 378 75.9
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.0e-183 644.0 378 76.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-182 643.3 357 80.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.6e-182 642.9 378 75.9
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.0e-182 642.5 378 75.4
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.7e-182 642.1 378 74.9
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.5e-182 641.7 378 75.1
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 4.5e-182 641.3 380 75.5
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 4.5e-182 641.3 380 75.5
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.5e-182 641.3 379 75.7
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 5.9e-182 641.0 378 76.2
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 7.7e-182 640.6 378 75.1
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.0e-181 640.2 378 75.4
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.7e-181 639.4 378 76.2
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.2e-181 639.0 378 74.9
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.2e-181 639.0 380 75.3
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.1e-180 636.7 379 75.5
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.5e-180 636.3 379 75.5
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 9.4e-180 633.6 378 73.5
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.0e-178 628.2 382 73.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 5.2e-178 627.9 378 73.8
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 8.8e-178 627.1 378 73.8
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.0e-177 625.9 378 75.7
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.4e-177 625.2 383 72.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.3e-176 623.2 413 71.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.4e-175 619.0 375 73.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-173 613.2 380 73.9
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.9e-173 612.1 389 72.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.5e-173 610.5 408 70.3
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 3.2e-172 608.6 385 71.4
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.6e-171 605.1 319 84.0
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.3e-170 602.4 397 70.5
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 8.8e-170 600.5 385 69.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 3.4e-169 598.6 378 70.9
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 3.7e-168 595.1 378 70.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.3e-168 594.0 378 68.0
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.8e-165 585.1 377 73.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.3e-164 581.6 393 68.7
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.0e-162 575.1 378 65.1
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.5e-161 573.2 415 65.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.5e-161 573.2 378 72.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.6e-161 572.4 325 78.2
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.2e-159 565.5 332 75.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.0e-157 560.5 463 58.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 6.6e-157 557.8 380 68.9
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 5.2e-154 548.1 319 75.2
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.9e-152 542.3 506 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 3.1e-146 522.3 378 62.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.2e-146 521.5 296 79.4
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 5.4e-143 511.5 378 63.5
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.6e-142 510.0 302 75.8
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.9e-140 503.1 379 59.4
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.6e-139 500.0 378 64.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 8.1e-139 497.7 321 68.5
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.3e-138 496.1 378 58.5
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.0e-137 493.0 382 59.2
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-131 473.8 327 68.2
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 8.4e-128 461.1 380 55.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.2e-126 457.2 269 75.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 2.4e-114 416.4 382 52.9
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.2e-95 352.8 202 78.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.6e-94 350.5 218 71.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 6.3e-83 312.0 388 41.0
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.0e-80 302.4 184 75.5
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 9.7e-76 288.1 162 80.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.5e-60 237.7 366 40.2
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.6e-60 236.9 148 71.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.7e-57 225.3 110 85.5
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.6e-48 195.3 118 78.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.0e-45 186.8 148 55.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.3e-40 171.4 183 49.7
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.5e-39 167.9 310 33.2
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 4.7e-38 162.9 111 67.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-31 141.0 188 43.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.6e-30 136.7 79 79.7
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 6.4e-27 125.9 81 69.1
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.4e-19 99.0 61 67.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.6e-14 83.6 60 58.3
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.2e-11 74.3 53 64.2
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 2.4e-10 70.9 41 73.2


User provided reference genes

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