Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1937.2 986 100.0
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1573.9 988 78.2
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1570.1 986 77.9
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1567.0 984 79.0
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1558.9 983 78.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1555.4 986 77.7
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1552.0 986 77.2
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1545.0 986 76.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1543.9 992 77.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1541.6 989 77.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1537.7 979 77.4
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1536.2 983 77.1
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1535.0 977 77.3
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1533.1 954 78.1
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1530.0 986 76.6
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1529.6 985 76.8
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1524.2 980 76.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1522.3 979 76.7
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1520.4 984 75.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1518.8 986 75.5
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1517.3 984 76.7
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1514.6 985 75.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1507.7 986 74.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1506.1 983 76.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1505.7 983 76.2
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1502.6 984 74.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1501.1 986 75.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1496.5 986 75.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1494.2 985 74.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1491.9 986 73.5
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1491.9 985 75.7
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1490.7 983 73.2
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1490.7 983 75.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1488.4 983 75.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1485.7 985 74.0
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1485.3 1009 73.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1481.5 982 72.6
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1479.9 987 72.9
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1478.0 986 73.1
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1474.5 987 74.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1472.2 986 73.7
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1471.1 987 73.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1469.5 987 72.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1466.8 985 72.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1466.1 987 73.8
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1464.9 987 73.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1462.6 983 72.1
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1459.1 983 71.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1458.7 983 72.1
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1458.4 986 72.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1456.8 983 71.7
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1455.7 986 72.7
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1454.9 983 72.8
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1453.7 983 71.7
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1452.6 986 71.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1452.2 986 72.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1451.8 986 71.4
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1450.3 986 71.6
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1449.5 983 71.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1448.3 983 72.6
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 983 72.3
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 991 71.6
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1447.6 986 72.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1446.0 998 71.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1443.7 983 72.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 986 72.2
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1441.0 987 72.2
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1440.2 987 72.2
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1438.7 983 71.3
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1438.3 986 72.5
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1437.6 983 71.7
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1436.4 1005 72.3
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 982 72.1
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1431.4 1006 70.8
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1430.2 986 70.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1426.4 984 71.6
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1424.8 972 71.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1422.9 983 70.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 983 69.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1420.2 986 70.6
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 1013 70.2
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 986 69.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1417.9 986 69.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1416.7 983 70.2
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 994 70.9
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1412.1 987 70.2
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1411.4 900 77.1
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1411.4 982 70.4
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1410.2 987 70.1
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1409.8 985 70.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 994 71.0
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1399.0 982 69.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1397.9 986 69.2
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 1078 65.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1386.3 989 70.3
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1385.9 955 71.4
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1380.5 988 67.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1377.8 980 68.0
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1377.8 984 69.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1377.1 994 67.2
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1375.1 980 67.9
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 953 69.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 979 67.3
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 990 68.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 1081 64.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 1001 68.3
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1356.7 1016 66.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1323.5 986 65.8
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1321.6 986 65.7
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1316.2 987 65.3
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1310.4 983 67.1
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1310.0 968 66.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1306.2 986 66.9
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1295.8 978 65.0
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1285.8 986 64.0
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1260.7 896 68.5
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 984 61.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 1015 61.8
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1234.2 976 61.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1227.2 847 70.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1220.7 985 60.7
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1161.4 848 65.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1145.6 882 65.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1134.0 953 60.3
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1088.6 809 65.9
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.9e-293 1012.7 976 52.8
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.3e-293 1011.5 989 52.0
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.2e-284 982.6 659 73.0
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.3e-260 901.4 541 81.5
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.0e-258 896.3 955 49.9
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-250 870.5 690 61.4
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.3e-249 866.3 658 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 7.3e-216 755.0 880 44.4
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-209 734.2 530 68.3
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-196 691.0 808 48.8
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 8.5e-172 608.6 362 80.9
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 5.9e-165 585.9 915 39.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.1e-158 563.1 419 66.3
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.8e-143 513.8 296 85.8
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 3.5e-141 506.9 296 83.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.3e-135 485.7 282 83.7
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-131 475.3 861 35.7
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-119 435.3 255 82.7
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 8.3e-119 432.6 1051 30.1
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 9.2e-118 429.1 330 64.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 3.9e-108 397.1 1025 30.7
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.9e-107 394.8 663 42.1
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.0e-97 360.5 318 56.9
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.3e-92 345.5 379 48.3
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.3e-83 314.3 257 61.5
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 1.8e-81 308.5 428 40.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.4e-78 298.1 362 45.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.6e-61 241.1 251 51.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 4.5e-56 224.2 147 79.6
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.5e-54 218.4 127 84.3
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.2e-54 218.0 184 59.2
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.1e-53 215.3 125 84.8
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.0e-52 213.0 140 72.1
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.1e-49 201.1 125 81.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 3.8e-47 194.5 105 86.7
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 7.4e-43 180.3 107 81.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 7.4e-43 180.3 107 81.3
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 9.7e-43 179.9 107 81.3
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 4.8e-42 177.6 203 54.7
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.0e-40 172.2 1055 22.1
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.6e-29 136.0 85 78.8
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 5.0e-23 114.4 72 75.0
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.9e-22 112.5 82 65.9
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.0e-20 105.1 63 79.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 5.2e-20 104.4 62 79.0
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 6.8e-20 104.0 82 58.5
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.5e-19 102.8 121 53.7
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.5e-19 102.8 121 53.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 6.3e-18 97.4 53 83.0
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.8e-17 95.9 71 66.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 5.4e-17 94.4 182 34.6
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 7.0e-17 94.0 188 36.2
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 4.5e-16 91.3 60 68.3
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 5.9e-16 90.9 138 40.6
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.3e-14 84.7 60 63.3
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 5.6e-14 84.3 48 72.9
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 9.5e-14 83.6 60 63.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 3.0e-07 62.0 37 78.4
Psat6g121640 Pisum sativum HOM05D000840 ORTHO05D000670 4.3e-06 58.2 79 34.2
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 7.3e-06 57.4 115 31.3


User provided reference genes

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