Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 3.8e-221 771.2 377 100.0
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.7e-88 330.5 389 47.8
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.2e-87 325.9 389 48.3
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.3e-87 324.7 391 47.3
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.1e-86 323.6 388 48.2
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.6e-86 322.4 389 47.0
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.8e-85 320.5 390 46.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.2e-83 313.5 389 47.3
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 4.8e-83 312.4 390 45.9
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.1e-82 309.7 382 43.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.0e-82 308.1 389 46.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.9e-81 305.4 389 45.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-80 304.3 389 46.3
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.9e-77 292.7 388 44.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.3e-75 285.4 399 44.6
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.4e-74 283.5 397 42.3
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.7e-72 277.3 397 42.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.2e-72 276.9 395 42.0
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.8e-72 276.2 396 41.4
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 8.5e-72 275.0 385 42.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 6.1e-70 268.9 396 42.4
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 2.6e-68 263.5 395 41.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.2e-65 254.6 399 40.1
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.9e-65 252.3 388 39.7
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.8e-64 249.6 398 39.2
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 5.0e-64 249.2 398 39.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.0e-64 249.2 388 39.4
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.5e-64 248.8 398 39.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 8.0e-62 241.9 411 38.2
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.5e-60 237.7 394 38.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 6.3e-59 232.3 388 39.2
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.5e-57 226.5 389 39.1
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.5e-55 220.3 246 49.2
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.7e-54 216.9 395 36.5
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.4e-50 204.5 380 38.9
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 7.0e-50 202.2 358 37.4
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.6e-49 201.1 396 36.4
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.6e-46 191.0 379 37.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.8e-46 190.3 407 33.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-42 178.3 380 35.8
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.8e-40 169.9 359 34.0
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.1e-39 168.3 354 33.6
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.1e-39 168.3 354 33.6
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 6.1e-38 162.5 381 34.6
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.4e-37 161.4 382 34.8
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.8e-37 161.0 381 33.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.0e-37 160.2 380 31.8
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 5.2e-37 159.5 384 35.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 6.8e-37 159.1 349 35.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.5e-36 157.9 380 33.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 2.6e-36 157.1 380 32.6
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.6e-36 157.1 407 31.4
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 2.6e-36 157.1 354 33.3
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 7.5e-36 155.6 380 33.2
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 9.8e-36 155.2 380 31.3
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.2e-35 154.1 368 33.4
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.2e-35 154.1 378 33.9
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.2e-35 154.1 386 32.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.9e-35 152.9 394 30.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.4e-34 151.4 400 32.2
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.2e-34 150.2 384 31.2
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 7.0e-34 149.1 379 30.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 9.2e-34 148.7 390 33.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-33 148.3 381 31.5
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.9e-32 143.3 380 31.1
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 9.5e-31 138.7 375 31.2
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.8e-30 137.1 280 36.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.7e-30 136.3 377 34.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.0e-29 135.2 373 32.2
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.8e-29 134.4 372 31.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 8.9e-29 132.1 354 31.1
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.0e-28 131.0 341 31.1
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 4.4e-28 129.8 387 28.7
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.9e-27 127.1 345 31.6
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 4.9e-27 126.3 366 30.6
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 6.4e-27 125.9 383 33.2
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 5.4e-26 122.9 366 30.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 5.4e-26 122.9 366 30.3
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 2.7e-25 120.6 383 32.9
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.5e-25 120.2 363 30.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.5e-25 120.2 388 29.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.0e-24 118.6 389 30.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.3e-24 118.2 384 28.1
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.7e-24 117.9 373 31.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.7e-24 117.9 373 31.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.7e-24 117.9 373 31.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.3e-24 117.5 355 29.6
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 3.9e-24 116.7 363 30.0
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 6.6e-24 115.9 342 31.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.5e-23 114.8 350 28.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.5e-23 114.0 149 42.3
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.3e-23 113.6 380 28.7
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 5.6e-23 112.8 340 29.1
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.8e-22 110.5 236 35.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-22 110.5 386 28.5
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 7.5e-20 102.4 286 34.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.9e-19 100.5 257 33.9
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.1e-18 98.6 375 28.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-18 98.6 375 28.8
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.1e-18 96.7 361 27.4
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 7.1e-18 95.9 257 33.1
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.2e-17 95.1 288 31.6
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.7e-17 94.0 396 26.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 7.8e-17 92.4 349 27.8
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.9e-16 90.1 106 43.4
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.9e-16 90.1 400 26.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.9e-15 87.8 345 28.4
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.6e-14 84.7 400 26.2
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 8.1e-14 82.4 375 27.5
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.8e-13 81.3 238 31.9
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.2e-12 78.6 259 27.8
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 9.9e-12 75.5 350 25.4
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 9.9e-12 75.5 267 30.7
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.3e-11 75.1 328 29.3
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 1.7e-11 74.7 259 30.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-11 74.7 368 25.8
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.9e-11 73.9 305 24.9
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.9e-11 73.2 365 25.2
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 8.4e-11 72.4 255 28.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 8.4e-11 72.4 342 26.6
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.1e-10 72.0 262 30.2
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.4e-10 71.6 250 29.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.4e-10 71.6 342 26.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.9e-10 71.2 245 26.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.9e-10 71.2 261 28.0
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.1e-10 69.3 270 28.9
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.1e-10 69.3 358 26.5
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-09 68.6 232 27.6
Sc23g0005170 Simmondsia chinensis HOM05D012164 ORTHO05D003767 4.6e-09 66.6 238 28.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-08 64.7 350 25.1
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.3e-08 64.3 370 25.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 8.6e-08 62.4 378 24.9
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 2.5e-07 60.8 333 23.7
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 4.3e-07 60.1 307 28.3
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 4.3e-07 60.1 166 25.3
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 5.6e-07 59.7 274 27.7
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.3e-07 59.3 264 25.4
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.8e-06 57.4 317 25.9
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 6.2e-06 56.2 378 25.9


User provided reference genes

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