Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.0e-183 645.6 317 100.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 8.6e-118 427.6 300 72.3
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 4.7e-116 421.8 307 66.4
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.4e-114 415.2 300 67.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-113 413.7 300 67.3
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 9.2e-112 407.5 274 71.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.5e-111 405.6 292 66.4
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.0e-110 404.1 277 69.7
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.0e-110 402.5 246 77.2
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.9e-110 402.1 275 69.8
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.6e-110 401.0 275 69.5
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.1e-109 400.6 275 69.8
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.9e-109 399.8 269 71.7
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 9.5e-109 397.5 245 75.1
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 9.5e-109 397.5 241 77.2
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.7e-108 395.2 275 69.1
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.3e-107 392.9 268 71.6
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.3e-107 392.9 307 67.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.3e-107 392.9 279 68.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.3e-107 392.9 241 78.0
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 8.9e-107 391.0 238 79.0
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-106 390.6 243 75.7
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.5e-106 390.2 244 75.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.4e-106 389.0 259 73.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.4e-106 388.7 248 74.2
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 5.8e-106 388.3 301 63.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 7.6e-106 387.9 248 76.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.3e-105 387.1 299 64.5
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 4.9e-105 385.2 256 73.8
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 8.4e-105 384.4 271 69.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.4e-104 383.6 248 72.6
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.9e-104 383.3 293 65.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-104 382.9 278 66.9
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 5.4e-104 381.7 272 69.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 7.1e-104 381.3 304 65.1
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.1e-103 379.8 244 72.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 2.1e-103 379.8 275 69.1
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.6e-103 378.6 239 74.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-102 377.5 241 73.0
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.0e-102 377.5 239 74.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-102 377.1 239 74.9
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.0e-102 375.9 255 70.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 6.6e-102 374.8 239 74.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 8.6e-102 374.4 280 65.7
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 8.6e-102 374.4 252 72.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.1e-101 374.0 255 68.6
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.5e-101 373.6 262 67.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.9e-101 373.2 239 75.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.3e-101 372.1 260 68.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.3e-101 372.1 254 69.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 5.6e-101 371.7 243 71.2
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 7.3e-101 371.3 244 74.6
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-100 369.8 302 63.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.1e-99 367.5 241 71.4
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.4e-99 367.1 251 68.1
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.8e-99 366.7 255 69.0
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.8e-99 366.7 241 71.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.8e-99 366.7 251 67.7
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.4e-99 366.3 319 61.4
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.1e-99 365.9 250 72.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.5e-98 363.6 236 72.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.4e-98 362.5 239 70.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.9e-98 360.9 239 70.3
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.7e-97 360.1 239 69.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.7e-97 360.1 266 66.2
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.9e-97 359.4 311 60.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.8e-97 359.0 239 73.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.4e-96 357.1 241 71.8
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-96 356.3 256 67.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.4e-96 355.1 256 69.5
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 7.1e-96 354.8 249 67.5
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.6e-95 353.6 239 72.8
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.7e-95 352.8 242 72.7
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 3.5e-95 352.4 240 72.1
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.6e-95 352.1 246 69.1
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.6e-95 352.1 241 70.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 7.8e-95 351.3 251 69.3
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 7.8e-95 351.3 239 71.5
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.8e-95 351.3 228 72.4
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-94 350.9 255 66.3
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-94 350.1 249 67.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.7e-94 350.1 227 73.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.3e-94 349.7 239 70.3
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.0e-94 349.4 275 61.1
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.0e-94 349.4 249 65.9
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 3.0e-94 349.4 205 79.0
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.0e-94 349.4 239 69.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.9e-94 349.0 241 71.8
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.9e-94 349.0 247 68.8
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 5.1e-94 348.6 255 64.7
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.1e-94 348.6 249 65.5
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.9e-93 346.7 257 67.3
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.5e-93 346.3 262 64.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 7.3e-93 344.7 240 69.2
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 9.6e-93 344.4 239 70.7
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-92 343.6 311 59.8
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.1e-92 343.2 248 65.7
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.8e-92 342.8 251 64.5
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.1e-91 339.3 314 56.1
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.1e-91 339.3 239 68.2
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.2e-90 337.4 241 67.6
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.5e-90 337.0 257 64.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.0e-90 336.7 236 67.4
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 5.8e-90 335.1 278 60.8
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.8e-90 335.1 193 78.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.8e-90 335.1 225 72.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 7.6e-90 334.7 193 79.3
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.9e-89 332.8 280 61.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 3.2e-88 329.3 250 66.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.2e-87 327.4 237 62.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 3.9e-86 322.4 229 66.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.9e-85 320.1 218 71.1
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.6e-84 317.0 168 86.3
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-84 317.0 203 72.9
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.8e-84 316.2 193 74.6
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.8e-84 315.5 193 74.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.4e-83 313.9 239 65.7
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.3e-83 312.0 223 68.6
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-80 304.3 213 69.5
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-80 302.8 213 69.0
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-79 299.3 206 69.9
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 7.9e-79 298.1 207 70.5
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-76 290.8 220 64.5
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.8e-74 282.0 176 75.6
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-73 280.8 188 69.7
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.9e-72 276.9 250 57.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.5e-71 272.7 154 81.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-68 263.5 214 62.1
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.1e-67 259.2 176 71.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-66 257.7 211 64.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.0e-66 256.9 193 66.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.3e-65 254.2 220 58.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 6.5e-65 251.9 239 55.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 5.5e-64 248.8 150 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.0e-62 244.6 251 51.8
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.3e-62 243.4 278 46.4
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.4e-59 233.4 130 80.0
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.4e-56 224.2 265 46.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 2.7e-55 219.9 256 47.7
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-54 216.9 123 77.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.0e-53 213.8 268 46.3
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 7.4e-53 211.8 204 53.9
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 3.7e-52 209.5 159 64.8
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.8e-52 209.1 294 41.8
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.7e-47 192.6 171 53.2
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-42 177.9 170 57.1
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.0e-42 177.2 116 75.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.7e-39 166.8 93 77.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 6.7e-38 162.2 89 82.0
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-33 147.9 186 47.8
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.9e-33 146.7 110 64.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.5e-32 144.4 84 72.6
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.3e-25 120.6 107 49.5
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.3e-25 120.6 305 27.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.0e-25 119.4 175 41.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 6.3e-20 102.4 77 68.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-19 101.7 162 31.5
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 8.6e-17 92.0 69 56.5
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.9e-16 90.9 69 56.5
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 9.5e-16 88.6 119 43.7
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.8e-14 84.3 74 59.5
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.4e-11 72.8 84 40.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.0e-11 72.4 61 59.0
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.2e-11 72.0 71 54.9
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.9e-10 69.3 85 43.5
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 3.0e-09 67.0 45 71.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.9e-08 64.3 43 65.1


User provided reference genes

Program Settings