Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 2964.9 1498 100.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1885.9 1607 63.1
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1861.7 1605 62.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1836.2 1614 60.8
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1831.6 1608 61.6
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1830.5 1603 61.9
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1827.4 1616 61.0
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1823.9 1615 61.2
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1822.8 1577 60.7
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1813.9 1619 60.6
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1810.0 1621 59.8
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1803.5 1612 60.9
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1788.1 1608 59.8
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1780.8 1617 59.8
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1776.5 1614 60.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1770.0 1600 60.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1766.1 1611 59.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1760.7 1611 58.8
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1746.1 1609 59.2
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1737.2 1605 59.1
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1719.9 1603 58.8
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1719.5 1607 58.7
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1676.0 1643 56.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1661.7 1611 56.0
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1630.5 1607 55.9
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1626.3 1629 55.1
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1624.4 1604 55.3
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1624.0 1639 54.5
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1621.7 1590 56.4
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1621.3 1597 55.7
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1619.0 1601 55.5
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1615.5 1614 55.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1614.0 1616 55.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1613.6 1617 55.1
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1610.1 1599 55.4
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1607.8 1606 55.2
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1599.3 1578 56.0
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1594.7 1615 54.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1594.3 1612 54.2
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1594.3 1616 53.8
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1585.9 1576 55.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1580.5 1607 54.2
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1576.2 1606 54.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1573.9 1570 55.6
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1570.1 1574 55.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1569.3 1712 51.3
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1568.5 1579 55.2
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1566.6 1581 55.1
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1555.0 1607 53.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1551.6 1578 54.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1550.4 1571 55.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1536.5 1629 52.7
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1533.9 1571 54.5
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1533.1 1598 54.4
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1522.7 1604 52.2
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1517.7 1614 51.9
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1513.8 1604 52.0
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1511.5 1600 53.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1505.0 1599 52.1
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1501.9 1623 52.4
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1500.7 1750 49.4
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1496.5 1609 52.3
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1493.0 1611 52.0
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1484.5 1621 51.1
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1483.8 1585 52.9
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1475.7 1584 53.0
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1470.3 1613 51.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1470.3 1614 50.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1466.8 1610 51.4
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1458.7 1573 51.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1452.2 1650 50.5
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1447.2 1610 49.8
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1445.3 1603 50.5
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1444.9 1551 51.5
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1416.7 1543 50.7
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1412.5 1548 50.1
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1398.3 1607 49.6
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1390.2 1561 50.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1381.7 1566 49.9
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1370.9 1604 48.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1355.5 1555 48.8
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1293.9 1612 48.3
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1249.6 1738 44.0
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1213.4 1028 61.6
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1121.3 1533 44.0
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 3.3e-308 1062.4 1448 44.1
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 4.0e-298 1028.9 1262 47.4
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 2.1e-275 953.4 1007 55.4
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 3.8e-256 889.4 1712 35.3
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 4.2e-255 885.9 1674 36.6
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.7e-254 883.2 703 65.3
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 3.8e-248 862.8 1550 36.4
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 2.8e-219 766.9 1638 33.7
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 8.0e-214 748.8 1122 41.4
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.2e-209 734.9 778 52.8
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 5.0e-208 729.6 662 58.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.2e-199 699.1 701 55.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 2.3e-173 614.4 1353 32.2
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.4e-170 604.4 748 48.3
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 9.9e-156 555.8 698 47.9
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 5.1e-120 437.2 358 59.2
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 6.9e-117 426.8 359 58.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 5.9e-100 370.5 1024 29.9
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 4.6e-68 264.6 263 56.7
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.9e-66 259.2 516 36.0
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.8e-64 252.7 250 50.4
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.3e-64 252.3 494 37.4
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.6e-63 248.8 212 57.1
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.0e-51 208.8 264 42.0
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.2e-47 196.8 201 51.2
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 4.3e-42 178.3 168 54.8
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 2.4e-32 146.0 133 55.6
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.1e-29 134.4 128 49.2
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.9e-20 104.4 89 55.1
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 9.6e-18 97.4 98 54.1
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.3e-17 97.1 69 65.2
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.5e-12 79.0 66 54.5
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.1e-11 75.1 70 45.7
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.4e-08 66.2 98 36.7
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.2e-07 63.9 95 43.2
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 3.4e-07 62.4 72 48.6


User provided reference genes

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