Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 7.7e-149 530.4 259 100.0
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.1e-74 283.1 165 77.6
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 8.1e-74 281.2 168 78.0
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.1e-73 280.8 168 78.0
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-73 280.8 165 77.0
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-73 280.4 168 76.8
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.3e-73 278.5 168 76.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 5.3e-73 278.5 168 74.4
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.2e-72 277.3 168 74.4
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.5e-72 276.9 168 76.2
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.0e-72 276.6 170 74.1
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 2.0e-72 276.6 168 75.6
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 4.5e-72 275.4 163 77.9
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 4.5e-72 275.4 168 76.8
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 5.8e-72 275.0 168 75.0
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.6e-72 274.6 164 78.0
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 7.6e-72 274.6 168 75.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 7.6e-72 274.6 168 75.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 7.6e-72 274.6 166 74.1
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 9.9e-72 274.2 168 74.4
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 9.9e-72 274.2 164 75.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 9.9e-72 274.2 164 75.0
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.7e-71 273.5 164 75.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-71 273.1 168 72.6
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.2e-71 273.1 168 76.2
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.2e-71 273.1 165 74.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.9e-71 272.7 164 76.2
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 4.9e-71 271.9 168 75.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.9e-71 271.9 168 74.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.4e-71 271.6 167 73.7
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.4e-71 271.6 165 73.3
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 8.4e-71 271.2 168 75.6
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 8.4e-71 271.2 168 74.4
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.4e-71 271.2 168 72.0
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-70 270.8 168 75.0
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.1e-70 270.8 168 75.0
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.4e-70 270.4 164 75.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.9e-70 270.0 168 73.2
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.9e-70 270.0 168 75.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.9e-70 270.0 168 73.8
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.5e-70 269.6 166 74.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 3.2e-70 269.2 168 75.0
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.2e-70 269.2 168 73.2
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.2e-70 269.2 166 74.1
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 4.2e-70 268.9 168 74.4
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 5.5e-70 268.5 168 74.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 5.5e-70 268.5 168 73.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 7.1e-70 268.1 168 74.4
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 9.3e-70 267.7 168 74.4
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 9.3e-70 267.7 168 71.4
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.6e-69 266.9 164 74.4
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 2.1e-69 266.5 166 73.5
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.1e-69 266.5 168 72.6
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.7e-69 266.2 167 73.1
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.5e-69 265.8 168 69.6
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 3.5e-69 265.8 168 69.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 6.0e-69 265.0 163 73.6
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.0e-69 265.0 165 70.9
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 7.9e-69 264.6 168 73.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.0e-68 264.2 168 72.0
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.3e-68 263.8 168 73.8
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.3e-68 263.8 164 73.2
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.8e-68 263.5 168 70.2
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 2.3e-68 263.1 165 72.7
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.3e-68 263.1 228 56.1
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.0e-68 262.7 168 70.2
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.9e-68 262.3 168 72.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 3.9e-68 262.3 166 71.7
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 3.9e-68 262.3 168 70.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 5.1e-68 261.9 168 72.6
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 5.1e-68 261.9 166 69.9
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 6.7e-68 261.5 164 72.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 6.7e-68 261.5 166 72.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.7e-68 261.2 166 68.7
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.7e-68 261.2 166 68.7
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.9e-67 260.0 166 70.5
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.9e-67 260.0 166 70.5
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.3e-67 259.2 163 71.2
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.3e-67 259.2 166 69.3
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.3e-67 258.8 168 73.8
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 5.6e-67 258.5 164 71.3
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 5.6e-67 258.5 168 70.2
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 5.6e-67 258.5 184 65.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.6e-67 258.5 165 72.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 9.6e-67 257.7 163 71.2
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 9.6e-67 257.7 165 70.3
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 9.6e-67 257.7 165 70.3
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 9.6e-67 257.7 168 68.5
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.6e-66 256.9 166 70.5
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.6e-66 256.9 167 70.1
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-66 256.9 166 70.5
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.8e-66 256.1 166 69.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.7e-66 255.8 164 70.1
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.7e-66 255.8 165 69.1
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 6.2e-66 255.0 168 69.6
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.1e-65 252.7 164 70.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 3.1e-65 252.7 166 68.7
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.2e-64 250.8 154 72.7
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.6e-64 249.6 163 68.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 4.5e-64 248.8 164 67.1
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.7e-63 246.9 161 68.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 6.5e-63 245.0 182 62.6
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 6.5e-63 245.0 164 64.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 8.4e-63 244.6 165 66.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.1e-62 244.2 168 64.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 9.3e-62 241.1 165 63.0
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 9.3e-62 241.1 164 63.4
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.9e-60 235.7 165 61.8
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 5.1e-60 235.3 164 65.9
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 5.1e-60 235.3 164 63.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.3e-59 232.6 168 67.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 9.7e-59 231.1 141 74.5
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 5.0e-55 218.8 236 50.0
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.2e-54 216.1 235 47.2
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.6e-53 213.8 171 59.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.4e-52 210.7 163 57.1
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.5e-51 206.5 131 74.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.3e-51 205.7 157 56.7
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.3e-50 204.1 157 56.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.7e-50 203.8 157 56.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.8e-50 203.0 157 54.8
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.7e-50 202.6 157 54.8
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.7e-50 202.6 157 54.8
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.3e-50 201.8 123 76.4
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.4e-49 199.9 124 73.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.2e-46 189.1 165 53.3
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.1e-43 181.0 153 49.7
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-43 180.6 159 51.6
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.6e-43 179.9 159 50.3
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.2e-42 176.8 123 66.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.0e-39 167.9 104 69.2
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.7e-39 167.2 135 56.3
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.2e-36 155.6 99 74.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.7e-35 152.1 119 58.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.3e-34 151.0 167 44.9
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-24 117.9 94 59.6
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.5e-23 112.1 93 61.3
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 8.5e-23 111.7 145 37.2
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 4.2e-22 109.4 141 38.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.3e-20 103.6 68 72.1
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.0e-19 100.5 69 59.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.1e-17 94.7 75 62.7
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-17 93.6 102 44.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 9.8e-11 71.6 69 46.4


User provided reference genes

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