Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.195 Carica papaya HOM05D006661 ORTHO05D008369 5.2e-116 421.0 204 100.0
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 2.2e-98 362.5 191 90.6
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 8.3e-98 360.5 191 87.4
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 8.3e-98 360.5 191 87.4
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 1.1e-97 360.1 191 89.0
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.1e-97 360.1 191 88.0
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.1e-97 360.1 191 88.0
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 1.1e-97 360.1 191 88.0
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 1.1e-97 360.1 191 88.0
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 1.9e-97 359.4 191 90.1
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 2.4e-97 359.0 191 90.1
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 2.4e-97 359.0 191 90.1
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 3.2e-97 358.6 191 89.0
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 3.2e-97 358.6 191 90.1
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 5.4e-97 357.8 191 88.0
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 7.0e-97 357.5 191 89.0
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 9.2e-97 357.1 191 89.5
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 1.2e-96 356.7 191 89.0
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 1.2e-96 356.7 191 88.5
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 1.6e-96 356.3 191 87.4
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 2.0e-96 355.9 191 86.4
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 2.7e-96 355.5 191 89.0
Manes.16G078200 Manihot esculenta HOM05D006661 ORTHO05D008369 3.5e-96 355.1 193 86.5
Haze_18212 Corylus avellana HOM05D006661 ORTHO05D008369 4.6e-96 354.8 191 86.9
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 6.0e-96 354.4 191 88.0
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 1.0e-95 353.6 193 85.5
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 1.7e-95 352.8 191 87.4
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 2.3e-95 352.4 191 86.4
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 3.0e-95 352.1 191 86.4
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 5.0e-95 351.3 191 86.9
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 6.6e-95 350.9 191 85.9
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 6.6e-95 350.9 191 85.9
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 6.6e-95 350.9 191 85.9
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 6.6e-95 350.9 191 85.9
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 1.1e-94 350.1 191 85.9
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 1.1e-94 350.1 191 86.4
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 1.5e-94 349.7 191 85.9
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 2.5e-94 349.0 191 85.9
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 2.5e-94 349.0 191 85.9
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 2.5e-94 349.0 191 85.9
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 2.5e-94 349.0 191 85.3
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 4.3e-94 348.2 191 86.9
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 4.3e-94 348.2 191 85.3
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 4.3e-94 348.2 191 85.9
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 7.3e-94 347.4 191 85.3
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 9.5e-94 347.1 191 84.8
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 9.5e-94 347.1 191 85.3
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 1.2e-93 346.7 191 84.3
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 1.6e-93 346.3 191 84.3
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 2.1e-93 345.9 191 84.8
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 2.1e-93 345.9 191 84.8
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 2.1e-93 345.9 191 84.8
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 2.8e-93 345.5 191 83.8
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 3.6e-93 345.1 191 83.8
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 4.7e-93 344.7 191 84.8
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 4.7e-93 344.7 191 84.3
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 6.2e-93 344.4 191 83.2
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 1.4e-92 343.2 191 84.8
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 2.3e-92 342.4 191 84.3
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 2.3e-92 342.4 191 85.3
AUR62022048 Chenopodium quinoa HOM05D006661 ORTHO05D008369 3.1e-92 342.0 191 83.8
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 3.1e-92 342.0 191 83.8
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 3.1e-92 342.0 191 83.8
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 6.8e-92 340.9 191 83.2
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 8.9e-92 340.5 191 82.2
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 1.2e-91 340.1 191 82.7
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 3.4e-91 338.6 191 83.2
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 3.4e-91 338.6 191 82.7
vmacro00160 Vaccinium macrocarpon HOM05D006661 ORTHO05D008369 3.4e-91 338.6 192 81.8
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 5.8e-91 337.8 191 82.7
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 7.5e-91 337.4 191 81.7
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 9.8e-91 337.0 191 81.2
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 1.7e-90 336.3 193 80.3
unitig_748.g7518 Utricularia gibba HOM05D006661 ORTHO05D008369 1.7e-90 336.3 191 82.2
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 2.9e-90 335.5 191 81.2
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 3.7e-90 335.1 193 79.8
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 1.9e-89 332.8 191 80.6
DCAR_003069 Daucus carota HOM05D006661 ORTHO05D008369 7.1e-89 330.9 192 79.2
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 2.1e-88 329.3 191 79.6
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 3.5e-88 328.6 191 79.6
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 7.8e-88 327.4 193 79.3
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 7.8e-88 327.4 191 79.1
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 1.3e-87 326.6 191 78.0
PSO832G3146 Papaver somniferum HOM05D006661 ORTHO05D008369 2.5e-86 322.4 191 79.6
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 5.6e-86 321.2 191 80.1
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 2.8e-85 318.9 193 76.7
ATR0789G168 Amborella trichopoda HOM05D006661 ORTHO05D008369 3.6e-85 318.5 191 77.0
MELO3C030341.2 Cucumis melo HOM05D006661 ORTHO05D008369 7.6e-83 310.8 264 62.9
HPP92_005507 Vanilla planifolia HOM05D006661 ORTHO05D008369 3.2e-81 305.4 199 70.9
Lj8A552G6 Lonicera japonica HOM05D006661 ORTHO05D008369 1.8e-76 289.7 163 84.7
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.5e-75 286.6 191 72.8
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 2.6e-75 285.8 164 82.9
AUR62009178 Chenopodium quinoa HOM05D006661 ORTHO05D008369 4.2e-73 278.5 163 81.0
EL10Ac2g03924 Beta vulgaris HOM05D006661 ORTHO05D008369 3.3e-70 268.9 199 67.8
SMO169G0297 Selaginella moellendorffii HOM05D006661 ORTHO05D008369 9.0e-68 260.8 190 64.2
FAN27G1843 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.2e-67 260.4 167 78.4
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 9.9e-67 257.3 192 60.9
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 9.3e-65 250.8 191 58.1
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 3.5e-64 248.8 189 60.3
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.3e-63 246.9 200 64.0
Sc23g0005520 Simmondsia chinensis HOM05D006661 ORTHO05D008369 3.0e-63 245.7 134 85.1
Sabra06G0180500 Salix brachista HOM05D006661 ORTHO05D008369 4.3e-62 241.9 134 85.1
CANSAT78G0664 Cannabis sativa HOM05D006661 ORTHO05D008369 5.1e-55 218.4 119 87.4
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 2.4e-52 209.5 119 82.4
SEGI_00170 Sequoiadendron giganteum HOM05D006661 ORTHO05D008369 3.2e-49 199.1 125 73.6
Sabra06G0180400 Salix brachista HOM05D006661 ORTHO05D008369 1.2e-43 180.6 98 85.7
CANSAT25G1095 Cannabis sativa HOM05D006661 ORTHO05D008369 3.4e-43 179.1 96 88.5
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 6.5e-42 174.9 98 83.7
MD08G1045300 Malus domestica HOM05D006661 ORTHO05D008369 8.5e-42 174.5 98 82.7
Cre02.g110450 Chlamydomonas reinhardtii HOM05D006661 ORTHO05D008369 1.7e-34 150.2 193 40.9
MCO14G523 Micromonas commoda HOM05D006661 ORTHO05D008369 7.2e-33 144.8 134 46.3
PRCOL_00000611 Prasinoderma coloniale HOM05D006661 ORTHO05D008369 2.7e-32 142.9 192 37.5
QL02p001525 Quercus lobata HOM05D006661 ORTHO05D008369 6.3e-29 131.7 82 74.4
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 5.5e-17 92.0 180 31.1
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 2.3e-15 86.7 218 27.5
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 3.3e-14 82.8 45 86.7
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 3.3e-14 82.8 45 86.7
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 3.3e-14 82.8 45 86.7
COL.COLO4_21031 Corchorus olitorius HOM05D006661 ORTHO05D008369 7.5e-14 81.6 44 88.6
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 1.3e-13 80.9 45 84.4
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 5.5e-09 65.5 162 30.2
Nitab4.5_0004055g0120 Nicotiana tabacum HOM05D006661 ORTHO05D008369 5.5e-09 65.5 66 45.5
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 9.4e-09 64.7 158 31.6
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.2e-08 64.3 153 30.1
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.2e-08 64.3 181 29.8
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.7e-08 63.2 158 31.0
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 2.7e-08 63.2 162 31.5
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 2.7e-08 63.2 158 29.7
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 3.6e-08 62.8 177 29.4
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 4.7e-08 62.4 165 31.5
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 6.1e-08 62.0 165 31.5
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 6.1e-08 62.0 149 30.2
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 8.0e-08 61.6 165 29.7
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 8.0e-08 61.6 159 28.9
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 8.0e-08 61.6 165 31.5
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.0e-07 61.2 161 29.2
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.4e-07 60.8 161 29.2
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 1.4e-07 60.8 158 31.0
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 1.8e-07 60.5 169 29.6
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 2.3e-07 60.1 162 30.9
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 2.3e-07 60.1 169 30.8
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.3e-07 60.1 158 29.7
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 3.0e-07 59.7 165 30.3
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 3.0e-07 59.7 158 30.4
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 3.0e-07 59.7 152 30.3
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 29.3
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 4.0e-07 59.3 161 31.1
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 28.7
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 4.0e-07 59.3 153 31.4
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 31.2
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 4.0e-07 59.3 161 29.8
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 4.0e-07 59.3 158 31.0
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 5.2e-07 58.9 158 29.7
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 5.2e-07 58.9 153 30.7
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 5.2e-07 58.9 153 30.7
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 5.2e-07 58.9 158 31.0
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 6.8e-07 58.5 157 29.3
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 6.8e-07 58.5 157 30.6
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 6.8e-07 58.5 158 29.1
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 6.8e-07 58.5 157 29.3
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 8.8e-07 58.2 153 30.7
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 8.8e-07 58.2 157 29.3
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 8.8e-07 58.2 161 29.2
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 8.8e-07 58.2 157 29.3
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 1.2e-06 57.8 148 32.4
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 1.2e-06 57.8 149 30.9
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 1.2e-06 57.8 158 29.7
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 1.2e-06 57.8 155 32.3
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 1.2e-06 57.8 157 28.7
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 1.5e-06 57.4 158 29.1
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 2.0e-06 57.0 162 29.0
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 2.0e-06 57.0 165 32.1
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 2.6e-06 56.6 157 29.3
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 2.6e-06 56.6 175 29.1
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 2.6e-06 56.6 157 28.7
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 3.4e-06 56.2 161 28.6
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 3.4e-06 56.2 157 28.0
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 3.4e-06 56.2 157 28.0
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 4.4e-06 55.8 157 29.3
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 4.4e-06 55.8 157 28.7
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 5.7e-06 55.5 113 30.1
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 5.7e-06 55.5 156 30.8
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 7.5e-06 55.1 158 29.1
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 9.8e-06 54.7 156 26.3


User provided reference genes

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