Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.157 Carica papaya HOM05D007827 ORTHO05D009749 1.9e-125 452.6 244 100.0
CiPaw.16G027300 Carya illinoinensis HOM05D007827 ORTHO05D009749 1.2e-31 141.0 240 41.2
Haze_18158 Corylus avellana HOM05D007827 ORTHO05D009749 1.8e-30 137.1 220 45.5
Thecc.09G056900 Theobroma cacao HOM05D007827 ORTHO05D009749 3.1e-30 136.3 240 45.0
QL02p000760 Quercus lobata HOM05D007827 ORTHO05D009749 5.2e-30 135.6 230 42.6
Sabra06G0174900 Salix brachista HOM05D007827 ORTHO05D009749 1.2e-29 134.4 235 41.3
MD15G1056900 Malus domestica HOM05D007827 ORTHO05D009749 2.2e-28 130.2 232 40.1
CsaV3_6G032200 Cucumis sativus L. HOM05D007827 ORTHO05D009749 1.2e-26 124.4 236 40.7
Lalb_Chr23g0267841 Lupinus albus HOM05D007827 ORTHO05D009749 1.2e-26 124.4 236 40.7
MELO3C011460.2 Cucumis melo HOM05D007827 ORTHO05D009749 2.7e-26 123.2 233 40.3
Medtr3g104620 Medicago truncatula HOM05D007827 ORTHO05D009749 3.3e-24 116.3 246 37.8
ClCG08G010040 Citrullus lanatus HOM05D007827 ORTHO05D009749 5.6e-24 115.5 232 40.5
Lj1g0018619 Lotus japonicus HOM05D007827 ORTHO05D009749 1.4e-22 110.9 236 35.6
Sed0014394 Sechium edule HOM05D007827 ORTHO05D009749 2.3e-22 110.2 232 37.9
Potri.006G226200 Populus trichocarpa HOM05D007827 ORTHO05D009749 3.1e-22 109.8 228 38.6
RcHm_v2.0_Chr6g0311201 Rosa chinensis HOM05D007827 ORTHO05D009749 1.2e-21 107.8 267 38.2
THA.LOC104799160 Tarenaya hassleriana HOM05D007827 ORTHO05D009749 2.0e-21 107.1 207 42.0
Cc08_g10870 Coffea canephora HOM05D007827 ORTHO05D009749 4.4e-21 105.9 260 37.3
Lj5g0025960 Lotus japonicus HOM05D007827 ORTHO05D009749 5.8e-21 105.5 248 35.5
CSS0031213 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 3.7e-20 102.8 245 38.0
Psat5g036160 Pisum sativum HOM05D007827 ORTHO05D009749 6.4e-20 102.1 231 36.4
Prupe.1G409500 Prunus persica HOM05D007827 ORTHO05D009749 6.4e-20 102.1 235 37.9
Medtr1g015840 Medicago truncatula HOM05D007827 ORTHO05D009749 1.1e-19 101.3 228 35.5
Manes.16G082000 Manihot esculenta HOM05D007827 ORTHO05D009749 1.4e-19 100.9 226 38.1
Phvul.009G078700 Phaseolus vulgaris HOM05D007827 ORTHO05D009749 3.2e-19 99.8 245 34.3
CAN.G130.10 Capsicum annuum HOM05D007827 ORTHO05D009749 4.1e-19 99.4 239 38.1
Peaxi162Scf00297g00062 Petunia axillaris HOM05D007827 ORTHO05D009749 7.0e-19 98.6 254 36.2
FvH4_2g31620 Fragaria vesca HOM05D007827 ORTHO05D009749 1.6e-18 97.4 275 35.6
Rhsim11G0042400 Rhododendron simsii HOM05D007827 ORTHO05D009749 1.6e-18 97.4 223 36.3
TPR.G13014 Trifolium pratense HOM05D007827 ORTHO05D009749 1.6e-18 97.4 271 33.6
FAN15G3566 Fragaria x ananassa HOM05D007827 ORTHO05D009749 2.7e-18 96.7 274 34.7
FAN24G3029 Fragaria x ananassa HOM05D007827 ORTHO05D009749 3.5e-18 96.3 276 35.1
Thhalv10005284m.g Eutrema salsugineum HOM05D002043 ORTHO05D009749 6.0e-18 95.5 214 36.0
Glyma.04G052400 Glycine max HOM05D007827 ORTHO05D009749 1.3e-17 94.4 125 44.8
Nitab4.5_0000972g0020 Nicotiana tabacum HOM05D007827 ORTHO05D009749 1.7e-17 94.0 244 37.7
Oeu018628.1 Olea europaea HOM05D007827 ORTHO05D009749 1.7e-17 94.0 228 35.5
TPR.G3528 Trifolium pratense HOM05D007827 ORTHO05D009749 2.3e-17 93.6 285 33.3
Actinidia01227 Actinidia chinensis HOM05D007827 ORTHO05D009749 5.1e-17 92.4 230 38.3
Dinv28003 Davidia involucrata HOM05D007827 ORTHO05D009749 5.1e-17 92.4 234 35.5
Nitab4.5_0007177g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 5.1e-17 92.4 246 35.4
CSS0026056 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.9e-16 90.5 217 37.3
Psat6g021400 Pisum sativum HOM05D007827 ORTHO05D009749 2.5e-16 90.1 237 33.8
Aqoxy7G01166 Aquilegia oxysepala HOM05D007827 ORTHO05D009749 5.6e-16 89.0 236 33.9
Sed0025262 Sechium edule HOM05D007827 ORTHO05D009749 5.6e-16 89.0 210 35.7
CARHR187400 Cardamine hirsuta HOM05D002043 ORTHO05D009749 9.5e-16 88.2 212 37.3
Glyma.14G097100 Glycine max HOM05D007827 ORTHO05D009749 9.5e-16 88.2 273 30.8
Gorai.009G043700 Gossypium raimondii HOM05D007827 ORTHO05D009749 9.5e-16 88.2 200 34.5
AL6G38110 Arabidopsis lyrata HOM05D002043 ORTHO05D002207 1.2e-15 87.8 226 36.3
Nitab4.5_0002039g0090 Nicotiana tabacum HOM05D007827 ORTHO05D009749 2.1e-15 87.0 253 34.4
Nitab4.5_0007037g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 2.1e-15 87.0 253 34.4
Ciclev10010468m.g Citrus clementina HOM05D007827 ORTHO05D009749 2.8e-15 86.7 195 37.4
Sp2g21610 Schrenkiella parvula HOM05D002043 ORTHO05D009749 2.8e-15 86.7 222 36.9
Gohir.D05G042650 Gossypium hirsutum HOM05D007827 ORTHO05D009749 3.6e-15 86.3 200 34.0
Carub.0006s2389 Capsella rubella HOM05D002043 ORTHO05D009749 4.7e-15 85.9 222 34.2
Atru.chr7.1942 Acer truncatum HOM05D007827 ORTHO05D009749 8.1e-15 85.1 94 52.1
COL.COLO4_08756 Corchorus olitorius HOM05D030950 ORTHO05D009749 8.1e-15 85.1 252 35.3
Phvul.001G037300 Phaseolus vulgaris HOM05D007827 ORTHO05D009749 1.1e-14 84.7 256 34.0
Hma1.2p1_0801F.1_g220250 Hydrangea macrophylla HOM05D007827 ORTHO05D009749 1.4e-14 84.3 238 34.0
Solyc06g011440.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 1.8e-14 84.0 222 34.7
VMungo1309G0458 Vigna mungo HOM05D007827 ORTHO05D009749 3.1e-14 83.2 246 32.5
Sopen06g006480 Solanum pennellii HOM05D007827 ORTHO05D009749 6.8e-14 82.0 222 34.2
Peaxi162Scf01001g00001 Petunia axillaris HOM05D007827 ORTHO05D009749 1.2e-13 81.3 221 33.9
CSS0037057 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 4.4e-13 79.3 217 35.9
arahy.Tifrunner.gnm1.ann1.WVJ8VS Arachis hypogaea HOM05D007827 ORTHO05D009749 1.3e-12 77.8 204 33.3
arahy.Tifrunner.gnm1.ann1.S72ULK Arachis hypogaea HOM05D007827 ORTHO05D009749 1.7e-12 77.4 209 34.0
CSS0004361 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.7e-12 77.4 248 35.5
Gohir.A05G040950 Gossypium hirsutum HOM05D007827 ORTHO05D009749 3.7e-12 76.3 201 31.3
DCAR_003136 Daucus carota HOM05D007827 ORTHO05D009749 6.4e-12 75.5 226 30.5
MBI04_g36906_MAGBIO Magnolia biondii HOM05D007827 ORTHO05D009749 3.2e-11 73.2 240 30.4
Migut.A00115 Erythranthe guttata HOM05D007827 ORTHO05D009749 5.4e-11 72.4 70 51.4
TAR626G1076 Trochodendron aralioides HOM05D007827 ORTHO05D009749 5.4e-11 72.4 226 35.0
VMungo0647G1789 Vigna mungo HOM05D007827 ORTHO05D009749 5.4e-11 72.4 250 31.2
Hma1.2p1_1933F.1_g308040 Hydrangea macrophylla HOM05D007827 ORTHO05D009749 9.2e-11 71.6 240 30.4
Oeu047101.1 Olea europaea HOM05D007827 ORTHO05D009749 9.2e-11 71.6 63 55.6
PGSC0003DMG400008199 Solanum tuberosum HOM05D007827 ORTHO05D009749 9.2e-11 71.6 250 32.0
Lsat_1_v5_gn_6_13921 Lactuca sativa HOM05D007827 ORTHO05D009749 2.1e-10 70.5 100 44.0
PGSC0003DMG400029878 Solanum tuberosum HOM05D007827 ORTHO05D009749 2.1e-10 70.5 222 32.4
FAN27G2967 Fragaria x ananassa HOM05D007827 ORTHO05D009749 3.5e-10 69.7 135 38.5
unitig_37.g12945 Utricularia gibba HOM05D007827 ORTHO05D009749 1.3e-09 67.8 71 54.9
Solyc08g062840.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 2.3e-09 67.0 248 30.2
SGA_v2.0_scaffold20G09207 Striga asiatica HOM05D007827 ORTHO05D009749 1.9e-08 63.9 126 38.1
Sopen08g018370 Solanum pennellii HOM05D007827 ORTHO05D009749 1.2e-07 61.2 227 30.8
HPP92_007654 Vanilla planifolia HOM05D007827 ORTHO05D009749 1.2e-07 61.2 69 47.8
arahy.Tifrunner.gnm1.ann1.EI9IQY Arachis hypogaea HOM05D007827 ORTHO05D009749 3.6e-07 59.7 190 29.5
COL.COLO4_21082 Corchorus olitorius HOM05D007827 ORTHO05D009749 3.6e-07 59.7 208 30.3
ATR0789G035 Amborella trichopoda HOM05D007827 ORTHO05D009749 4.7e-07 59.3 87 36.8
HPP92_009146 Vanilla planifolia HOM05D007827 ORTHO05D009749 4.7e-07 59.3 215 30.7
ECA240G3049 Erigeron canadensis HOM05D007827 ORTHO05D009749 8.1e-07 58.5 118 36.4
SalBow4G1896 Salvia bowleyana HOM05D007827 ORTHO05D009749 1.8e-06 57.4 142 34.5


User provided reference genes

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