Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.2e-94 349.0 176 100.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 6.9e-24 114.8 101 58.4
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.4e-21 107.1 90 61.1
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.9e-21 106.7 101 56.4
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.9e-21 106.7 93 59.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 4.2e-21 105.5 99 55.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.4e-21 105.1 103 56.3
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.7e-20 102.8 85 62.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.0e-20 101.7 95 57.9
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 2.3e-19 99.8 100 57.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 3.0e-19 99.4 91 57.1
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 5.1e-19 98.6 98 54.1
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 8.7e-19 97.8 151 39.1
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.1e-18 97.4 105 51.4
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 3.3e-18 95.9 75 62.7
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.3e-18 95.9 94 52.1
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 4.3e-18 95.5 101 45.5
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 4.3e-18 95.5 100 54.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 4.3e-18 95.5 105 52.4
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.6e-18 95.1 101 54.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.6e-18 94.4 102 44.1
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 9.6e-18 94.4 96 54.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-17 93.6 75 60.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.8e-17 92.8 104 51.0
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.6e-17 92.4 96 50.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.8e-17 92.0 98 52.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 6.2e-17 91.7 80 56.2
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.1e-17 91.3 93 51.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.1e-16 90.9 108 50.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.1e-16 90.9 99 53.5
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-16 90.9 87 54.0
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.4e-16 90.5 113 45.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-16 90.1 93 51.6
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-16 89.7 93 51.6
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.1e-16 89.4 81 53.1
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 4.0e-16 89.0 99 49.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.0e-16 89.0 90 48.9
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 5.3e-16 88.6 79 54.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.5e-15 87.0 96 50.0
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.6e-15 86.3 87 52.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.4e-15 85.9 93 55.9
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.4e-15 85.9 83 54.2
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.5e-15 85.5 91 46.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 5.8e-15 85.1 75 53.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 5.8e-15 85.1 101 49.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 9.9e-15 84.3 92 46.7
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 9.9e-15 84.3 88 51.1
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.7e-14 83.6 91 44.0
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-14 83.6 91 44.0
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.7e-14 83.6 74 56.8
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.7e-14 83.6 104 47.1
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.7e-14 83.6 88 46.6
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.7e-14 83.6 108 44.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.2e-14 83.2 104 46.2
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.9e-14 82.8 105 46.7
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.8e-14 82.4 83 51.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.9e-14 82.0 93 47.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 4.9e-14 82.0 92 47.8
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.9e-14 82.0 105 43.8
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 4.9e-14 82.0 100 46.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.4e-14 81.6 95 48.4
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 6.4e-14 81.6 82 53.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 8.4e-14 81.3 100 44.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.4e-14 81.3 100 44.0
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.4e-14 81.3 93 46.2
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 8.4e-14 81.3 83 51.8
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 8.4e-14 81.3 67 55.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.1e-13 80.9 99 46.5
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.1e-13 80.9 99 46.5
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.4e-13 80.5 85 45.9
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.9e-13 80.1 95 45.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-13 80.1 99 47.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-13 80.1 99 47.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.4e-13 79.7 78 50.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.2e-13 79.3 107 44.9
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.2e-13 79.3 82 48.8
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 4.2e-13 79.0 82 48.8
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 4.2e-13 79.0 77 49.4
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 9.3e-13 77.8 94 44.7
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.3e-13 77.8 78 52.6
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 9.3e-13 77.8 91 50.5
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 9.3e-13 77.8 121 38.8
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.2e-12 77.4 95 45.3
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.6e-12 77.0 86 45.3
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.6e-12 77.0 95 46.3
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.6e-12 77.0 79 46.8
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.1e-12 76.6 94 42.6
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.7e-12 76.3 79 46.8
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.7e-12 76.3 101 44.6
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.5e-12 75.9 88 47.7
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.5e-12 75.9 93 44.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.5e-12 75.9 111 42.3
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.6e-12 75.5 86 53.5
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 4.6e-12 75.5 94 44.7
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.6e-12 75.5 97 45.4
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.6e-12 75.5 93 48.4
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.9e-12 74.7 62 62.9
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 7.9e-12 74.7 87 46.0
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 7.9e-12 74.7 98 41.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 7.9e-12 74.7 93 44.1
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.9e-12 74.7 82 51.2
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.0e-11 74.3 72 48.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.3e-11 73.9 72 48.6
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.3e-11 73.9 72 48.6
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.3e-11 73.9 72 50.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-11 73.9 77 48.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.8e-11 73.6 54 57.4
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.8e-11 73.6 82 47.6
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.0e-11 72.8 81 49.4
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 3.9e-11 72.4 75 52.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.1e-11 72.0 64 53.1
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 6.7e-11 71.6 83 48.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.7e-11 71.6 101 40.6
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.7e-11 71.6 101 40.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 8.7e-11 71.2 82 45.1
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 8.7e-11 71.2 88 47.7
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.1e-10 70.9 98 41.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-10 70.9 98 41.8
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-10 70.9 105 43.8
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.5e-10 70.5 78 47.4
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.9e-10 70.1 82 43.9
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.9e-10 70.1 105 38.1
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-10 69.7 61 59.0
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.3e-10 69.3 64 53.1
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.3e-10 69.3 92 43.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.6e-10 68.6 72 51.4
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 5.6e-10 68.6 61 55.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 5.6e-10 68.6 79 48.1
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.6e-10 68.6 101 39.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 7.4e-10 68.2 78 44.9
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.3e-09 67.4 54 55.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.6e-09 67.0 121 35.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 2.1e-09 66.6 81 43.2
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.1e-09 66.6 80 45.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.1e-09 66.6 87 44.8
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.8e-09 66.2 65 50.8
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 3.7e-09 65.9 112 40.2
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.8e-09 65.5 61 50.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.4e-08 63.2 92 40.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-08 63.2 99 42.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.4e-08 63.2 98 40.8
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 4.0e-08 62.4 92 42.4
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.3e-08 62.0 45 64.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.5e-07 60.5 41 68.3
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.0e-07 60.1 38 73.7
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 7.6e-07 58.2 81 42.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.2e-06 56.6 68 44.1
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 6.4e-06 55.1 62 45.2


User provided reference genes

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