Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 3.2e-29 131.0 61 100.0
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 3.8e-14 80.9 60 70.0
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.0e-14 80.5 59 71.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.5e-13 77.0 60 68.3
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.5e-13 77.0 60 71.7
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.6e-12 75.5 59 67.8
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 2.1e-12 75.1 60 61.7
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-12 75.1 60 66.7
AT2G32190 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.6e-12 73.9 60 63.3
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 6.1e-12 73.6 59 66.1
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 6.1e-12 73.6 59 62.7
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 6.1e-12 73.6 59 66.1
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 6.1e-12 73.6 59 66.1
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.1e-12 73.6 60 66.7
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.1e-12 73.6 59 67.8
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 7.9e-12 73.2 59 66.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.4e-11 72.4 59 62.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.4e-11 72.4 60 65.0
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.4e-11 72.4 57 68.4
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.3e-11 71.6 59 64.4
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-11 71.6 59 64.4
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 3.0e-11 71.2 59 61.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.0e-11 71.2 57 66.7
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 3.9e-11 70.9 59 61.0
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 3.9e-11 70.9 58 63.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.1e-11 70.5 59 64.4
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.1e-11 70.5 52 73.1
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.1e-11 70.5 59 64.4
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.1e-11 70.5 59 64.4
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 8.8e-11 69.7 59 64.4
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 8.8e-11 69.7 58 63.8
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 8.8e-11 69.7 58 63.8
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 8.8e-11 69.7 69 55.1
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.1e-10 69.3 62 64.5
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.1e-10 69.3 61 65.6
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.1e-10 69.3 60 60.0
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.6e-10 68.2 47 70.2
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 2.6e-10 68.2 56 66.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.6e-10 68.2 55 60.0
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.3e-10 67.8 68 57.4
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 4.4e-10 67.4 49 65.3
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 5.7e-10 67.0 63 58.7
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 5.7e-10 67.0 63 58.7
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 5.7e-10 67.0 63 58.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 5.7e-10 67.0 63 60.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 7.4e-10 66.6 60 60.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 9.7e-10 66.2 59 54.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-09 65.9 57 59.6
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.2e-09 65.1 62 62.9
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 2.2e-09 65.1 55 58.2
CsaV3_7G022690 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.8e-09 64.7 72 44.4
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 4.8e-09 63.9 60 61.7
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 4.8e-09 63.9 53 64.2
MELO3C012630.2 Cucumis melo HOM05D002385 ORTHO05D002245 8.2e-09 63.2 72 44.4
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.2e-09 63.2 62 51.6
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 8.2e-09 63.2 57 64.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.1e-08 62.8 63 55.6
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-08 62.4 56 66.1
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.8e-08 62.0 59 54.2
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.8e-08 62.0 56 57.1
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-08 61.6 63 58.7
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 2.4e-08 61.6 59 57.6
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.4e-08 61.6 56 58.9
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.1e-08 61.2 66 53.0
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.1e-08 61.2 72 47.2
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.1e-08 61.2 66 53.0
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.1e-08 61.2 56 58.9
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.1e-08 60.8 50 60.0
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.1e-08 60.8 46 65.2
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.1e-08 60.8 48 62.5
AL4G27560 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.3e-08 60.5 62 59.7
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.9e-08 60.1 48 62.5
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 6.9e-08 60.1 62 61.3
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 6.9e-08 60.1 51 64.7
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 6.9e-08 60.1 63 60.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 6.9e-08 60.1 63 57.1
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.9e-08 60.1 62 56.5
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 9.1e-08 59.7 52 61.5
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 1.5e-07 58.9 48 62.5
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.5e-07 58.9 59 55.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.5e-07 58.9 59 55.9
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.0e-07 58.5 77 48.1
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-07 58.5 38 68.4
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.6e-07 58.2 62 59.7
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-07 58.2 48 70.8
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.6e-07 58.2 64 54.7
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 3.4e-07 57.8 45 64.4
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-07 57.8 48 62.5
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 4.5e-07 57.4 73 53.4
Cfa021234 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.9e-07 57.0 50 68.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.9e-07 57.0 46 71.7
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 5.9e-07 57.0 58 58.6
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.7e-07 56.6 45 64.4
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 7.7e-07 56.6 45 64.4
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 7.7e-07 56.6 58 55.2
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 7.7e-07 56.6 58 55.2
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 7.7e-07 56.6 59 54.2
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.0e-06 56.2 48 60.4
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.0e-06 56.2 61 55.7
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-06 56.2 69 47.8
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-06 56.2 55 61.8
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.3e-06 55.8 62 54.8
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.3e-06 55.8 38 68.4
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.3e-06 55.8 48 58.3
ATR0763G265 Amborella trichopoda HOM05D002385 ORTHO05D002245 1.7e-06 55.5 62 54.8
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-06 55.1 59 50.8
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-06 55.1 65 53.8
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.2e-06 55.1 65 50.8
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 2.9e-06 54.7 59 54.2
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-06 54.7 56 58.9
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-06 54.7 54 61.1
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.9e-06 54.7 62 54.8
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.9e-06 54.7 63 50.8
BcaB08g37322 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-06 54.3 56 51.8
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 3.8e-06 54.3 59 52.5
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 3.8e-06 54.3 72 43.1
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 5.0e-06 53.9 59 50.8
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 5.0e-06 53.9 59 55.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 5.0e-06 53.9 35 68.6
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.0e-06 53.9 63 54.0
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 6.5e-06 53.5 63 55.6
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 6.5e-06 53.5 60 51.7
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 6.5e-06 53.5 58 51.7
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.5e-06 53.1 59 47.5
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 8.5e-06 53.1 59 50.8
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 8.5e-06 53.1 51 56.9
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.5e-06 53.1 35 68.6
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 8.5e-06 53.1 59 52.5
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 8.5e-06 53.1 59 49.2
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 8.5e-06 53.1 55 52.7
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.5e-06 53.1 65 55.4


User provided reference genes

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