Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 4.6e-76 287.7 138 100.0
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.9e-53 212.6 117 84.6
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.1e-44 181.0 139 65.5
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 4.0e-43 178.3 138 63.0
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.0e-43 178.3 137 65.0
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 6.8e-43 177.6 140 62.1
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 6.8e-43 177.6 140 62.1
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.5e-42 176.4 137 62.0
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.0e-42 176.0 137 62.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.0e-42 176.0 137 62.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.6e-42 175.6 140 61.4
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 3.4e-42 175.3 138 63.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.4e-42 175.3 140 63.6
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 4.4e-42 174.9 137 65.7
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.4e-42 174.9 139 63.3
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 7.5e-42 174.1 142 60.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 9.8e-42 173.7 142 59.9
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.7e-41 171.8 138 63.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.3e-41 171.0 138 65.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 6.3e-41 171.0 138 60.9
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.1e-40 170.2 138 62.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.4e-40 169.9 138 64.5
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.1e-40 168.7 131 62.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.1e-40 168.7 138 63.8
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.1e-40 168.3 140 58.6
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 4.1e-40 168.3 138 61.6
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 5.4e-40 167.9 131 61.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 5.4e-40 167.9 140 57.9
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.2e-39 166.8 140 57.9
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.6e-39 166.4 131 61.8
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.6e-39 166.4 140 57.1
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 5.9e-39 164.5 131 61.1
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.7e-39 164.1 131 60.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 7.7e-39 164.1 138 60.9
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.0e-38 163.7 138 60.1
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.7e-38 162.9 140 57.1
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 8.5e-38 160.6 132 60.6
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 8.5e-38 160.6 138 61.6
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.1e-37 160.2 135 60.7
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.5e-37 159.8 151 57.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 3.2e-37 158.7 117 65.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 9.4e-37 157.1 129 59.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.2e-36 156.8 135 55.6
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-36 156.8 135 55.6
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.1e-36 156.0 132 62.9
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 6.1e-36 154.5 136 54.4
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.0e-35 153.7 137 56.9
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.3e-35 152.5 139 60.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.3e-35 152.5 117 62.4
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.2e-35 151.4 135 54.1
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 9.8e-34 147.1 140 59.3
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-33 146.7 121 62.8
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.2e-33 146.0 138 56.5
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.2e-33 146.0 116 62.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.8e-33 145.6 135 53.3
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 3.7e-33 145.2 99 70.7
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.4e-32 142.5 135 56.3
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 3.1e-32 142.1 133 54.1
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.1e-32 141.7 139 54.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 9.1e-32 140.6 118 60.2
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 9.1e-32 140.6 139 56.1
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-31 140.2 122 59.0
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.6e-31 139.8 135 54.8
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.6e-31 139.8 137 51.1
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 2.0e-31 139.4 120 60.8
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.0e-31 139.4 140 57.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.7e-31 139.0 144 53.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.5e-31 138.7 144 53.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.5e-31 138.3 122 59.8
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.5e-31 138.3 146 52.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.7e-30 136.3 185 45.9
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 2.9e-30 135.6 139 54.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.9e-30 135.6 140 54.3
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 5.0e-30 134.8 119 57.1
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 6.6e-30 134.4 129 52.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.5e-29 133.3 128 53.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.5e-29 133.3 128 53.9
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.5e-29 132.5 115 54.8
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.3e-29 132.1 95 68.4
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.2e-29 131.7 118 61.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 5.5e-29 131.3 137 52.6
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 5.5e-29 131.3 144 50.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.2e-28 130.2 118 56.8
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.6e-28 129.8 112 61.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.6e-28 129.8 115 59.1
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.6e-28 129.8 137 51.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.1e-28 129.4 111 61.3
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 2.8e-28 129.0 109 63.3
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.6e-28 128.6 114 57.9
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 8.0e-28 127.5 136 50.0
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 8.0e-28 127.5 131 49.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 8.0e-28 127.5 129 57.4
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.4e-27 126.7 127 54.3
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.8e-27 126.3 137 49.6
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.8e-27 126.3 135 49.6
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.0e-27 125.2 117 54.7
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 5.2e-27 124.8 117 57.3
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.9e-27 124.0 119 53.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 3.4e-26 122.1 138 47.8
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 4.4e-26 121.7 106 59.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.4e-26 121.7 94 64.9
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.2e-25 119.4 135 46.7
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.9e-25 119.0 115 53.0
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 4.9e-25 118.2 136 49.3
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 4.9e-25 118.2 112 57.1
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 6.3e-25 117.9 105 56.2
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.3e-25 117.9 136 50.7
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 8.3e-25 117.5 137 48.9
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.3e-25 117.5 99 57.6
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.4e-24 115.9 139 45.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.4e-24 115.9 119 52.1
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.2e-24 115.5 66 78.8
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.2e-24 115.5 130 50.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.2e-24 115.5 130 50.0
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.2e-23 113.6 118 51.7
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.6e-23 113.2 62 79.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.0e-23 112.8 60 83.3
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.3e-22 110.2 67 70.1
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.9e-22 109.0 75 66.7
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.9e-22 109.0 124 50.8
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 8.6e-22 107.5 111 55.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.1e-21 107.1 106 51.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.9e-21 106.3 65 75.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.9e-21 106.3 133 45.1
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.5e-21 105.9 113 56.6
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.5e-21 105.9 113 53.1
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.6e-21 104.8 151 41.7
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.6e-21 104.8 61 75.4
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.8e-20 102.4 79 63.3
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 8.0e-20 100.9 115 47.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 5.8e-18 94.7 61 68.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 9.8e-18 94.0 52 78.8
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 9.2e-16 87.4 95 51.6
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 6.0e-15 84.7 114 50.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.7e-14 83.2 51 66.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.3e-14 82.8 52 67.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.6e-14 81.3 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.5e-13 79.3 54 66.7
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.3e-13 79.0 133 40.6
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.6e-12 76.6 41 87.8
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.1e-12 74.3 85 47.1
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 3.1e-11 72.4 113 43.4
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.1e-11 72.4 49 61.2
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 8.9e-11 70.9 103 46.6
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 5.8e-10 68.2 40 75.0
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.3e-09 67.0 90 45.6
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.4e-08 62.8 70 47.1
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.7e-07 59.3 37 73.0
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 7.8e-07 57.8 81 46.9
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 5.1e-06 55.1 69 52.2
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 6.6e-06 54.7 36 66.7
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 8.6e-06 54.3 50 58.0


User provided reference genes

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