Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 1.5e-41 172.6 93 100.0
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.1e-28 129.8 94 74.5
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 1.1e-28 129.8 93 72.0
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.4e-28 129.4 93 78.5
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 9.2e-28 126.7 95 76.8
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.2e-27 126.3 92 72.8
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 1.6e-27 125.9 93 71.0
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 2.1e-27 125.6 93 69.9
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.1e-27 125.6 92 72.8
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 2.7e-27 125.2 92 72.8
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.7e-27 125.2 92 72.8
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.6e-27 124.4 93 72.0
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 4.6e-27 124.4 92 70.7
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 6.0e-27 124.0 94 74.5
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.0e-27 124.0 92 71.7
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 6.0e-27 124.0 92 71.7
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 6.0e-27 124.0 95 74.7
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 7.8e-27 123.6 94 74.5
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.8e-27 123.6 93 72.0
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 7.8e-27 123.6 94 72.3
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.0e-26 123.2 91 72.5
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.3e-26 122.9 92 70.7
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-26 122.9 93 71.0
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-26 122.9 93 71.0
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 1.7e-26 122.5 92 72.8
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.3e-26 122.1 91 71.4
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.0e-26 121.7 93 68.8
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.1e-26 120.9 91 71.4
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 6.6e-26 120.6 94 72.3
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 6.6e-26 120.6 94 69.1
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.6e-26 120.6 93 67.7
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 6.6e-26 120.6 93 67.7
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 6.6e-26 120.6 100 69.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 8.6e-26 120.2 92 71.7
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 8.6e-26 120.2 91 72.5
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.1e-25 119.8 92 68.5
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.9e-25 119.0 92 70.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.9e-25 119.0 92 70.7
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.9e-25 119.0 89 69.7
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.3e-25 118.2 93 67.7
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 3.3e-25 118.2 93 68.8
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 5.6e-25 117.5 92 67.4
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 7.3e-25 117.1 92 67.4
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 7.3e-25 117.1 92 66.3
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 9.5e-25 116.7 100 66.0
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.2e-24 116.3 92 66.3
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.2e-24 116.3 92 66.3
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.6e-24 115.9 92 66.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 2.8e-24 115.2 96 66.7
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 4.7e-24 114.4 92 67.4
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 4.7e-24 114.4 92 64.1
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 6.2e-24 114.0 91 67.0
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 6.2e-24 114.0 92 65.2
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 8.1e-24 113.6 92 67.4
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.1e-23 113.2 92 65.2
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.1e-23 113.2 92 65.2
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.1e-23 113.2 100 67.0
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.1e-23 113.2 93 71.0
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 1.4e-23 112.8 107 63.6
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.4e-23 112.8 86 69.8
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.3e-23 112.1 92 66.3
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 3.1e-23 111.7 102 63.7
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 4.0e-23 111.3 91 67.0
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 4.0e-23 111.3 93 64.5
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 4.0e-23 111.3 92 63.0
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 4.0e-23 111.3 92 65.2
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 4.0e-23 111.3 103 61.2
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 5.2e-23 110.9 92 66.3
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.8e-23 110.5 103 62.1
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 6.8e-23 110.5 92 65.2
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 6.8e-23 110.5 100 67.0
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 8.9e-23 110.2 99 62.6
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 8.9e-23 110.2 85 69.4
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.2e-22 109.8 92 66.3
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.5e-22 109.4 103 61.2
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.0e-22 109.0 92 66.3
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 2.0e-22 109.0 91 67.0
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 2.0e-22 109.0 103 60.2
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.6e-22 108.6 102 58.8
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 2.6e-22 108.6 93 63.4
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 2.6e-22 108.6 93 63.4
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.6e-22 108.6 103 59.2
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 3.4e-22 108.2 93 61.3
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 3.4e-22 108.2 92 64.1
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 4.4e-22 107.8 102 58.8
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 4.4e-22 107.8 93 69.9
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.8e-22 107.5 83 71.1
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 7.6e-22 107.1 102 62.7
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 7.6e-22 107.1 99 61.6
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 7.6e-22 107.1 103 61.2
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 9.9e-22 106.7 93 64.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 9.9e-22 106.7 92 62.0
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 9.9e-22 106.7 95 65.3
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.3e-21 106.3 93 62.4
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-21 106.3 93 62.4
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.3e-21 106.3 105 61.9
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 1.3e-21 106.3 93 62.4
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.7e-21 105.9 100 60.0
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.7e-21 105.9 104 61.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-21 105.5 92 63.0
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.2e-21 105.5 93 61.3
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.2e-21 105.5 93 61.3
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.2e-21 105.5 105 58.1
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 2.2e-21 105.5 103 57.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 2.9e-21 105.1 101 60.4
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 2.9e-21 105.1 92 63.0
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 3.7e-21 104.8 100 59.0
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.7e-21 104.8 91 60.4
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 3.7e-21 104.8 92 58.7
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 3.7e-21 104.8 100 60.0
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.7e-21 104.8 71 74.6
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 4.9e-21 104.4 103 57.3
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 4.9e-21 104.4 103 58.3
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.4e-21 103.6 91 60.4
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 8.4e-21 103.6 99 57.6
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 8.4e-21 103.6 103 59.2
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-20 102.8 92 64.1
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-20 102.8 93 63.4
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-20 102.8 92 64.1
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-20 102.8 92 64.1
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 1.4e-20 102.8 93 63.4
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.4e-20 102.8 98 57.1
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.9e-20 102.4 103 58.3
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 3.2e-20 101.7 76 69.7
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 3.2e-20 101.7 103 59.2
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 5.4e-20 100.9 93 59.1
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 7.1e-20 100.5 92 60.9
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 7.1e-20 100.5 92 60.9
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 7.1e-20 100.5 92 60.9
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.1e-20 100.5 100 59.0
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 9.2e-20 100.1 101 57.4
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 3.5e-19 98.2 90 60.0
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.5e-19 98.2 91 58.2
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.5e-19 98.2 92 58.7
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 3.5e-19 98.2 103 60.2
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 4.6e-19 97.8 77 68.8
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 4.6e-19 97.8 99 55.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 4.6e-19 97.8 83 65.1
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 6.0e-19 97.4 90 58.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 6.0e-19 97.4 92 58.7
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 6.0e-19 97.4 77 67.5
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 6.0e-19 97.4 77 67.5
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.0e-18 96.7 103 59.2
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 1.3e-18 96.3 92 58.7
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 1.3e-18 96.3 92 58.7
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.7e-18 95.9 99 53.5
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 2.3e-18 95.5 101 53.5
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.0e-18 95.1 104 54.8
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 6.6e-18 94.0 72 68.1
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 8.6e-18 93.6 84 59.5
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.1e-17 93.2 88 60.2
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 3.3e-17 91.7 77 64.9
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 3.3e-17 91.7 77 64.9
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 4.3e-17 91.3 77 64.9
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 4.3e-17 91.3 102 50.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 4.3e-17 91.3 98 55.1
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 5.6e-17 90.9 77 63.6
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 5.6e-17 90.9 94 60.6
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.2e-16 89.7 101 53.5
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.6e-16 89.4 92 57.6
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.8e-16 88.6 95 54.7
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.7e-16 87.8 81 64.2
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 4.7e-16 87.8 99 55.6
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.1e-15 86.7 101 51.5
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.8e-15 85.9 84 56.0
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.8e-15 85.9 98 51.0
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.8e-15 85.9 93 55.9
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.4e-15 85.5 105 54.3
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 5.2e-15 84.3 88 55.7
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 5.2e-15 84.3 94 56.4
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 8.9e-15 83.6 99 55.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 8.9e-15 83.6 87 59.8
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.2e-14 83.2 96 49.0
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.0e-14 82.4 86 53.5
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 9.9e-14 80.1 96 54.2
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 6.4e-13 77.4 80 60.0
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.6e-11 71.2 74 50.0
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 1.0e-10 70.1 70 54.3
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.7e-10 69.3 70 54.3
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 3.0e-10 68.6 84 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 5.1e-10 67.8 70 50.0
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 5.1e-10 67.8 70 57.1
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 5.6e-09 64.3 81 48.1
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 3.6e-08 61.6 76 52.6
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 1.1e-07 60.1 55 58.2


User provided reference genes

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