Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 4.6e-100 367.9 179 100.0
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.6e-65 253.1 184 70.7
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.5e-63 246.5 180 69.4
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.5e-63 246.5 181 70.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.2e-62 242.7 180 67.8
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 6.5e-62 241.1 182 68.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 8.4e-62 240.7 155 76.1
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.2e-61 238.4 182 67.6
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.2e-60 236.9 179 66.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.6e-60 235.0 182 67.6
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.6e-60 235.0 183 64.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.7e-59 230.7 186 68.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.1e-58 230.3 183 64.5
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-58 229.6 180 65.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.9e-58 229.6 164 68.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.5e-58 229.2 183 66.7
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.3e-58 228.8 180 65.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.7e-58 228.0 137 78.1
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.4e-58 227.6 148 74.3
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.4e-58 227.6 185 63.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.6e-58 227.3 180 64.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 9.6e-58 227.3 189 63.0
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.6e-57 226.5 151 72.8
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.7e-57 225.3 181 61.3
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.7e-57 225.3 179 62.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 4.8e-57 224.9 185 67.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 6.2e-57 224.6 181 66.3
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.4e-56 223.4 178 62.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.4e-56 222.6 137 75.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.1e-56 222.2 159 69.8
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.0e-56 221.9 179 63.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 5.3e-56 221.5 189 63.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.2e-55 220.3 113 87.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.2e-55 220.3 179 63.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.2e-55 220.3 186 61.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.2e-55 220.3 181 60.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-55 219.9 186 61.3
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.6e-55 219.2 190 63.7
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.6e-55 219.2 179 62.6
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 3.4e-55 218.8 178 63.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 5.8e-55 218.0 193 62.7
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.0e-54 217.2 109 89.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.7e-54 216.5 154 68.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.7e-54 216.5 196 59.7
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.2e-54 216.1 113 85.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.2e-54 216.1 189 61.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 5.0e-54 214.9 171 66.7
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 6.5e-54 214.5 109 87.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.1e-53 213.8 125 79.2
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.9e-53 213.0 146 71.2
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 3.2e-53 212.2 182 62.6
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.2e-53 212.2 109 85.3
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.2e-53 211.8 138 77.5
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 5.5e-53 211.5 109 86.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 7.1e-53 211.1 191 59.7
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.2e-52 210.3 202 57.4
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-52 209.9 106 85.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.1e-52 209.5 113 84.1
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.1e-52 209.5 113 85.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.7e-52 209.1 145 69.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.5e-52 208.8 188 55.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.5e-52 208.8 190 60.0
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.5e-52 208.8 183 59.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-51 206.8 142 67.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-51 206.5 179 60.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.3e-51 206.1 183 59.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-51 205.7 181 58.0
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.0e-51 205.7 122 73.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.1e-51 204.9 139 67.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.1e-51 204.9 182 58.2
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.1e-50 203.8 144 65.3
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.1e-50 203.8 158 64.6
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.5e-50 203.4 185 56.2
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.9e-50 203.0 145 64.8
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.5e-50 202.6 145 63.4
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 3.3e-50 202.2 107 85.0
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.3e-50 201.8 157 64.3
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 5.7e-50 201.4 186 53.8
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.7e-50 201.4 184 56.5
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.7e-50 201.4 168 60.7
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-49 200.3 188 55.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-49 199.5 174 56.9
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.8e-49 198.4 186 53.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 6.3e-49 198.0 120 75.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.4e-48 196.8 107 79.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.0e-47 193.0 102 81.4
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.0e-47 193.0 232 47.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.5e-47 191.8 121 68.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 7.7e-47 191.0 190 53.7
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-46 188.7 183 53.6
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-46 188.7 122 67.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-46 188.7 122 67.2
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.8e-46 188.7 129 65.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.0e-46 188.3 143 60.1
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 5.0e-46 188.3 97 83.5
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 8.5e-46 187.6 117 75.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.9e-45 186.4 191 53.4
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.9e-45 186.4 111 73.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.5e-45 184.9 186 53.8
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.4e-45 184.1 180 52.8
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-44 183.7 176 52.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.6e-44 183.3 208 50.0
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 2.7e-44 182.6 172 58.7
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.6e-44 182.2 106 76.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 4.6e-44 181.8 138 62.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 6.1e-44 181.4 130 69.2
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.0e-43 180.6 186 51.1
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-43 179.5 141 61.0
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 5.1e-43 178.3 172 51.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-42 176.4 178 51.1
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 5.7e-42 174.9 173 54.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 9.7e-42 174.1 184 49.5
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-41 173.7 117 65.0
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.2e-41 172.9 119 63.9
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.3e-41 171.4 176 48.9
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 8.2e-41 171.0 106 65.1
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.1e-40 169.1 139 61.9
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 5.3e-40 168.3 99 72.7
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-39 166.4 144 59.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.6e-39 166.0 122 59.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.6e-39 166.0 170 57.1
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.9e-39 164.9 106 64.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.9e-39 164.9 106 64.2
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.0e-38 161.8 125 59.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.5e-38 161.0 108 63.9
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-37 159.8 104 62.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-37 159.8 104 62.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-37 159.8 104 62.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 7.2e-37 157.9 104 61.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 7.2e-37 157.9 104 61.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-36 156.8 106 60.4
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.6e-36 156.8 106 60.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.1e-36 156.4 106 60.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.1e-36 156.4 140 56.4
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.6e-36 155.6 105 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.0e-35 154.1 105 59.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.6e-34 149.4 130 59.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.3e-34 149.1 105 56.2
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 9.7e-34 147.5 130 61.5
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 4.8e-33 145.2 195 47.2
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 4.1e-32 142.1 113 63.7
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 4.1e-32 142.1 95 60.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.2e-31 140.6 155 47.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 3.5e-31 139.0 143 55.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.5e-31 138.7 105 50.5
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.0e-30 137.5 105 52.4
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.2e-30 136.3 143 55.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.0e-30 135.2 68 80.9
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.1e-29 134.0 64 92.2
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.1e-29 134.0 140 53.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.4e-24 117.1 68 75.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-24 116.7 180 41.1
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.4e-24 116.3 65 81.5
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 3.5e-23 112.5 63 76.2
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 3.5e-23 112.5 148 43.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.2e-22 109.8 108 43.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 8.5e-22 107.8 132 50.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.3e-19 99.8 103 40.8
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 7.5e-18 94.7 105 41.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.7e-15 86.3 85 52.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.0e-14 82.0 94 53.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.8e-11 73.6 88 50.0
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 6.8e-11 71.6 73 49.3
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-10 70.9 117 37.6
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 3.7e-09 65.9 117 35.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 6.3e-09 65.1 115 37.4
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-09 64.7 117 37.6
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 2.9e-06 56.2 111 36.9


User provided reference genes

Program Settings