Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 0.0e+00 1238.8 599 100.0
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 2.2e-231 805.8 612 64.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 1.6e-229 799.7 609 65.7
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.4e-225 786.6 613 64.3
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 3.1e-225 785.4 612 64.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 9.9e-224 780.4 614 63.0
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 8.4e-223 777.3 606 65.2
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 5.4e-222 774.6 607 65.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 2.7e-221 772.3 603 63.3
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 8.1e-218 760.8 666 59.0
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 2.0e-216 756.1 606 63.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 2.2e-215 752.7 604 62.6
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 3.2e-214 748.8 608 63.2
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 2.1e-213 746.1 607 61.8
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 2.7e-213 745.7 602 63.6
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.7e-212 743.0 611 62.8
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 5.6e-211 738.0 612 60.6
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 7.3e-211 737.6 609 61.1
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 2.8e-210 735.7 695 56.0
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.1e-206 723.8 615 59.5
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 9.3e-206 720.7 602 60.3
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 2.1e-205 719.5 601 59.6
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 5.1e-204 714.9 602 60.5
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 3.7e-202 708.8 601 59.6
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 4.8e-202 708.4 615 57.9
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.8e-201 706.4 607 59.3
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 2.6e-200 702.6 601 58.7
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 4.5e-200 701.8 597 60.1
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 7.6e-200 701.0 597 60.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.0e-199 700.7 602 59.0
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 3.8e-199 698.7 601 58.4
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.8e-199 698.7 604 59.6
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 3.2e-198 695.7 601 58.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 4.2e-198 695.3 604 58.1
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 1.2e-197 693.7 604 59.3
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 2.1e-197 693.0 605 59.0
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 4.6e-197 691.8 597 59.6
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 7.9e-197 691.0 604 59.1
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.0e-196 690.6 604 58.9
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.3e-196 690.3 607 59.1
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.0e-196 689.1 605 59.0
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 8.7e-196 687.6 604 58.1
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 1.1e-195 687.2 598 59.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 1.1e-195 687.2 603 57.5
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.9e-195 686.4 604 57.6
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 2.5e-195 686.0 602 59.0
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 9.6e-195 684.1 600 58.3
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 2.1e-194 682.9 609 59.1
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.8e-194 682.6 609 58.0
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 1.4e-193 680.2 604 57.9
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.8e-193 679.9 622 55.8
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 5.3e-193 678.3 604 57.3
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.2e-192 677.2 540 62.8
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 5.0e-191 671.8 604 57.3
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 8.4e-191 671.0 606 57.4
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 2.5e-190 669.5 614 57.2
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 1.2e-189 667.2 606 56.9
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 2.7e-189 666.0 626 56.5
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 3.5e-189 665.6 606 57.6
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 7.9e-189 664.5 666 52.0
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 2.8e-186 656.0 606 56.1
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 6.5e-183 644.8 604 53.5
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 2.5e-182 642.9 622 52.1
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 3.2e-182 642.5 606 54.6
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 3.2e-182 642.5 606 57.4
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 4.2e-182 642.1 611 53.7
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 7.2e-182 641.3 606 54.6
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 9.4e-182 641.0 611 53.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 4.6e-181 638.6 603 54.7
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 4.6e-181 638.6 622 52.7
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 3.7e-178 629.0 612 53.9
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.0e-176 623.2 611 52.9
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 2.5e-174 616.3 627 52.0
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.7e-173 612.8 542 59.8
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 6.1e-173 611.7 633 49.3
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 7.9e-173 611.3 427 69.3
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.8e-172 610.1 611 52.9
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 8.2e-170 601.3 602 52.8
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 4.1e-169 599.0 641 49.5
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.0e-168 596.7 606 52.6
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.9e-167 592.8 605 50.4
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.5e-166 589.7 678 48.5
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 3.2e-166 589.3 612 49.8
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 7.0e-161 571.6 546 54.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.0e-160 570.1 429 66.9
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.4e-155 552.7 534 54.3
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.6e-152 543.9 604 47.5
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 6.8e-148 528.5 608 46.1
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 2.4e-145 520.0 617 46.5
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.2e-122 443.7 545 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 4.7e-117 426.0 622 38.3
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.9e-113 414.1 319 63.6
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 2.4e-113 413.7 630 40.3
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 5.4e-113 412.5 319 63.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 7.1e-113 412.1 659 36.7
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-98 364.0 348 54.3
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 2.4e-97 360.5 312 60.9
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 3.1e-84 317.0 589 34.6
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.3e-82 311.6 493 40.6
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 4.3e-78 296.6 311 48.9
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.9e-76 289.3 348 44.3
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.5e-74 282.7 334 44.0
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.1e-68 263.8 207 62.3
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-57 226.1 247 48.6
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 9.4e-57 225.7 293 47.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.1e-54 218.8 284 41.2
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 3.7e-53 213.8 203 51.2
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 2.8e-45 187.6 647 25.5
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.4e-39 168.7 131 60.3
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 5.2e-39 166.8 156 55.1
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.4e-38 164.1 569 25.8
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.9e-34 151.0 121 63.6
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.0e-31 141.0 158 44.9
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.7e-30 136.7 121 59.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 4.1e-28 130.6 109 52.3
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.7e-27 127.9 125 54.4
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 5.0e-26 123.6 86 65.1
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-24 118.6 100 55.0
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-22 110.9 112 45.5
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.7e-21 108.6 115 46.1
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.2e-16 92.4 80 51.2
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.3e-13 82.4 83 50.6
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 4.6e-11 73.9 84 46.4
C05p13900 Brassica napus HOM05D002332 ORTHO05D002509 6.2e-08 63.5 192 27.6
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.3e-07 61.6 129 27.9
SHI23109 Sapria himalayana HOM05D002634 ORTHO05D003100 5.2e-07 60.5 288 23.6
BcaC09g49926 Brassica carinata HOM05D002332 ORTHO05D002509 6.8e-07 60.1 229 26.2
C01p31140 Brassica napus HOM05D002332 ORTHO05D002509 6.8e-07 60.1 229 26.2
BolC1t03049H Brassica oleracea HOM05D002332 ORTHO05D002509 6.8e-07 60.1 229 26.2
A01p24930 Brassica napus HOM05D002332 ORTHO05D002509 1.2e-06 59.3 229 26.2
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 1.2e-06 59.3 200 24.5
Thhalv10010392m.g Eutrema salsugineum HOM05D002332 ORTHO05D002509 1.2e-06 59.3 192 26.6
BolC5t33917H Brassica oleracea HOM05D002332 ORTHO05D002509 1.5e-06 58.9 192 27.1
Sp5g12890 Schrenkiella parvula HOM05D002332 ORTHO05D002509 1.5e-06 58.9 293 21.8
BraA01t02404Z Brassica rapa HOM05D002332 ORTHO05D002509 2.6e-06 58.2 229 26.2
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.6e-06 58.2 131 26.0
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.6e-06 58.2 74 47.3
C02p35790 Brassica napus HOM05D002332 ORTHO05D002509 3.4e-06 57.8 162 26.5
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 3.4e-06 57.8 200 24.5
Cfa018082 Carpinus fangiana HOM05D002332 ORTHO05D002509 3.4e-06 57.8 193 27.5
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 3.4e-06 57.8 150 25.3
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 3.4e-06 57.8 106 31.1
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 4.4e-06 57.4 106 30.2
Aa31LG10G9730 Aethionema arabicum HOM05D002332 ORTHO05D002509 5.8e-06 57.0 232 25.4
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.8e-06 57.0 157 28.0


User provided reference genes

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