Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.4e-241 839.3 461 100.0
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.7e-167 593.2 459 72.3
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.6e-165 586.6 461 74.8
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 3.4e-163 578.9 446 76.0
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.9e-159 565.8 461 72.9
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 6.6e-159 564.7 461 73.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 8.6e-159 564.3 452 73.2
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.5e-158 563.5 458 72.3
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 9.5e-158 560.8 468 70.1
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 4.9e-154 548.5 447 72.7
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 4.9e-154 548.5 458 71.8
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.2e-152 543.9 468 67.9
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.6e-152 543.5 459 70.2
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.3e-148 529.6 461 69.8
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.6e-147 526.2 460 69.1
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 1.3e-146 523.9 458 68.8
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.7e-146 522.3 452 70.1
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 4.9e-146 521.9 458 68.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 5.4e-145 518.5 458 69.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.2e-144 517.3 460 68.3
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.7e-144 516.2 452 69.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 3.5e-144 515.8 460 68.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.6e-143 511.5 452 69.2
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.2e-141 507.3 456 67.5
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.6e-141 505.8 456 67.3
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.1e-140 504.2 460 66.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.2e-140 501.9 460 65.9
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.4e-139 499.2 467 66.6
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.6e-136 490.3 508 61.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 6.0e-136 488.4 461 63.1
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 5.1e-135 485.3 455 65.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.5e-134 483.8 387 73.4
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 3.3e-134 482.6 454 65.2
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 7.3e-134 481.5 459 64.5
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 7.3e-134 481.5 461 62.7
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.6e-133 480.3 462 64.1
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 8.1e-133 478.0 461 62.0
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.1e-132 477.6 459 63.8
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.1e-132 476.1 461 64.0
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 5.2e-132 475.3 497 57.3
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.5e-131 473.8 449 63.7
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 5.8e-131 471.9 434 66.4
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.7e-130 470.3 452 64.2
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.7e-130 470.3 433 65.8
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 3.8e-130 469.2 336 80.7
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 3.8e-130 469.2 442 66.3
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.4e-129 466.5 462 61.5
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.2e-128 464.2 449 63.9
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.6e-128 463.8 458 65.9
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 3.5e-128 462.6 331 80.4
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.5e-126 456.4 447 63.5
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 3.3e-126 456.1 461 60.5
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.2e-125 454.1 428 64.0
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.2e-123 447.6 382 68.8
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.2e-123 447.6 434 64.5
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.5e-123 447.2 433 62.6
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.0e-123 446.8 455 64.2
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.6e-123 446.4 459 63.8
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 5.8e-123 445.3 448 61.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 5.8e-123 445.3 428 63.8
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.7e-122 443.7 425 64.9
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.8e-122 442.6 428 63.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 8.4e-122 441.4 417 65.5
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 8.4e-122 441.4 427 64.6
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.9e-121 440.3 450 64.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.4e-121 439.9 428 63.3
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 4.2e-121 439.1 449 64.8
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.7e-120 436.4 459 63.6
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.3e-119 434.1 453 65.1
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.7e-119 433.7 452 65.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 2.3e-119 433.3 460 62.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.5e-118 429.9 459 62.5
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 4.3e-118 429.1 454 65.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 4.3e-118 429.1 453 65.1
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 4.3e-118 429.1 453 65.1
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.3e-117 427.6 446 60.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 3.1e-116 422.9 461 62.7
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.0e-115 420.2 438 62.1
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.6e-115 419.9 378 71.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 3.4e-115 419.5 452 62.8
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 3.4e-115 419.5 452 62.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 4.5e-115 419.1 432 60.6
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 5.8e-115 418.7 430 60.9
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 5.8e-115 418.7 457 56.5
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 9.3e-113 411.4 431 63.6
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 3.5e-112 409.5 406 65.5
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 6.7e-111 405.2 357 73.1
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.6e-109 400.6 300 70.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.1e-108 397.9 403 62.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.3e-108 395.6 428 59.6
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 9.3e-105 384.8 380 63.7
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 6.0e-104 382.1 433 58.2
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 7.9e-104 381.7 382 62.3
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 3.0e-103 379.8 380 63.7
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 5.1e-103 379.0 377 62.9
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 6.7e-103 378.6 331 71.6
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 6.7e-103 378.6 261 77.8
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 7.4e-102 375.2 392 62.5
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 2.5e-97 360.1 450 54.0
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.8e-95 354.0 441 58.0
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.5e-94 350.1 428 54.9
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.1e-93 347.1 379 62.5
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.2e-91 341.3 250 71.2
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.2e-77 292.0 203 76.4
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 3.4e-75 286.6 444 42.3
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 3.2e-73 280.0 349 54.7
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 7.2e-73 278.9 228 68.4
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.8e-71 274.2 275 65.8
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 9.1e-68 261.9 320 54.1
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 4.5e-59 233.0 401 42.9
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 7.2e-57 225.7 238 65.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-56 224.2 316 50.0
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.3e-55 220.7 308 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 3.0e-55 220.3 308 47.7
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 6.3e-53 212.6 137 81.8
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.7e-51 207.2 226 50.9
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 3.6e-40 170.2 257 40.1
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.8e-39 167.9 123 70.7
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 4.1e-36 156.8 210 44.3
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 5.8e-30 136.3 77 90.9
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.3e-26 125.2 159 56.0
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.5e-17 94.4 60 76.7
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.4e-12 78.6 164 34.8
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.7e-10 71.6 158 36.1
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.3e-09 67.0 110 40.0


User provided reference genes

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