Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc67.44 Carica papaya HOM05D000367 ORTHO05D026474 4.0e-76 288.1 157 100.0
COL.COLO4_11930 Corchorus olitorius HOM05D000367 ORTHO05D001438 5.7e-22 108.2 106 64.2
Thecc.06G029100 Theobroma cacao HOM05D000367 ORTHO05D001438 2.7e-19 99.4 110 60.9
Gohir.D06G120600 Gossypium hirsutum HOM05D000367 ORTHO05D001438 5.9e-19 98.2 109 61.5
Gorai.010G140900 Gossypium raimondii HOM05D000367 ORTHO05D001438 5.9e-19 98.2 109 61.5
Gohir.A06G113200 Gossypium hirsutum HOM05D000367 ORTHO05D001438 1.0e-18 97.4 109 63.3
Duzib235G0501 Durio zibethinus HOM05D000367 ORTHO05D001438 6.5e-18 94.7 120 53.3
TWI75G0679 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 1.1e-17 94.0 103 63.1
Dinv30615 Davidia involucrata HOM05D000367 ORTHO05D001438 2.5e-17 92.8 106 63.2
TWI18G1067 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 7.2e-17 91.3 103 62.1
Dinv38128 Davidia involucrata HOM05D000367 ORTHO05D001438 9.5e-17 90.9 104 58.7
Rhsim12G0190700 Rhododendron simsii HOM05D000367 ORTHO05D001438 1.6e-16 90.1 101 61.4
CsaV3_4G001970 Cucumis sativus L. HOM05D000367 ORTHO05D001438 2.8e-16 89.4 111 57.7
Sed0010779 Sechium edule HOM05D000367 ORTHO05D001438 8.0e-16 87.8 111 55.9
Atru.chr1.2905 Acer truncatum HOM05D000367 ORTHO05D001438 1.4e-15 87.0 109 54.1
MELO3C017839.2 Cucumis melo HOM05D000367 ORTHO05D001438 1.4e-15 87.0 111 55.9
vmacro16889 Vaccinium macrocarpon HOM05D000367 ORTHO05D001438 2.3e-15 86.3 102 58.8
Lj5A74G67 Lonicera japonica HOM05D000367 ORTHO05D001438 3.4e-14 82.4 102 59.8
CARHR074450 Cardamine hirsuta HOM05D000367 ORTHO05D001438 5.7e-14 81.6 103 58.3
Thhalv10018440m.g Eutrema salsugineum HOM05D000367 ORTHO05D001438 7.5e-14 81.3 103 58.3
TAR625G0785 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.7e-13 80.1 99 55.6
Cfa001954 Carpinus fangiana HOM05D000367 ORTHO05D001438 4.9e-13 78.6 104 56.7
Nitab4.5_0003463g0030 Nicotiana tabacum HOM05D000367 ORTHO05D001438 4.9e-13 78.6 104 56.7
PGR031G2348 Punica granatum HOM05D000367 ORTHO05D001438 2.4e-12 76.3 103 59.2
ClCG07G012190 Citrullus lanatus HOM05D000367 ORTHO05D001438 3.1e-12 75.9 110 52.7
Ciclev10025441m.g Citrus clementina HOM05D000367 ORTHO05D001438 3.1e-12 75.9 110 53.6
Sed0006472 Sechium edule HOM05D000367 ORTHO05D001438 3.1e-12 75.9 112 54.5
THA.LOC104800440 Tarenaya hassleriana HOM05D000367 ORTHO05D001438 3.1e-12 75.9 102 57.8
Sp5g35800 Schrenkiella parvula HOM05D000367 ORTHO05D001438 7.0e-12 74.7 101 54.5
arahy.Tifrunner.gnm1.ann1.HU2JKE Arachis hypogaea HOM05D000367 ORTHO05D001438 9.2e-12 74.3 156 42.3
Cc04_g04480 Coffea canephora HOM05D000367 ORTHO05D001438 9.2e-12 74.3 97 53.6
AT1G80030 Arabidopsis thaliana HOM05D000367 ORTHO05D001438 1.2e-11 73.9 103 53.4
Nitab4.5_0008560g0040 Nicotiana tabacum HOM05D000367 ORTHO05D001438 1.2e-11 73.9 106 53.8
AL2G41510 Arabidopsis lyrata HOM05D000367 ORTHO05D001438 1.6e-11 73.6 98 57.1
CiPaw.01G249000 Carya illinoinensis HOM05D000367 ORTHO05D001438 1.6e-11 73.6 104 58.7
Haze_16570 Corylus avellana HOM05D000367 ORTHO05D001438 2.0e-11 73.2 108 53.7
arahy.Tifrunner.gnm1.ann1.L74AP1 Arachis hypogaea HOM05D000367 ORTHO05D001438 2.7e-11 72.8 110 51.8
MD17G1213500 Malus domestica HOM05D000367 ORTHO05D001438 3.5e-11 72.4 108 53.7
Actinidia08793 Actinidia chinensis HOM05D000367 ORTHO05D001438 4.5e-11 72.0 102 53.9
Sopen03g035710 Solanum pennellii HOM05D000367 ORTHO05D001438 5.9e-11 71.6 102 57.8
Glyma.15G006900 Glycine max HOM05D000367 ORTHO05D001438 1.0e-10 70.9 111 52.3
Prupe.3G088900 Prunus persica HOM05D000367 ORTHO05D001438 1.3e-10 70.5 108 53.7
Solyc03g116790.4 Solanum lycopersicum HOM05D000367 ORTHO05D001438 1.3e-10 70.5 102 57.8
Hma1.2p1_0242F.1_g100660 Hydrangea macrophylla HOM05D000367 ORTHO05D001438 1.7e-10 70.1 109 52.3
SGA_v2.0_scaffold26G11345 Striga asiatica HOM05D000367 ORTHO05D001438 2.9e-10 69.3 96 51.0
Medtr2g104030 Medicago truncatula HOM05D000367 ORTHO05D001438 3.8e-10 68.9 110 51.8
Carub.0002s2749 Capsella rubella HOM05D000367 ORTHO05D001438 5.0e-10 68.6 104 54.8
Glyma.13G366300 Glycine max HOM05D000367 ORTHO05D026474 5.0e-10 68.6 110 49.1
Nn8g39531 Nelumbo nucifera HOM05D001442 ORTHO05D001438 1.1e-09 67.4 74 55.4
QL05p030721 Quercus lobata HOM05D000367 ORTHO05D001438 1.1e-09 67.4 71 60.6
AUR62016329 Chenopodium quinoa HOM05D000367 ORTHO05D001438 1.5e-09 67.0 103 47.6
VMungo1080G1849 Vigna mungo HOM05D000367 ORTHO05D001438 1.5e-09 67.0 109 49.5
Actinidia15977 Actinidia chinensis HOM05D000367 ORTHO05D001438 1.9e-09 66.6 102 51.0
Aa31LG4G310 Aethionema arabicum HOM05D000030 ORTHO05D001438 1.9e-09 66.6 106 50.9
BcaC08g47566 Brassica carinata HOM05D000367 ORTHO05D001438 1.9e-09 66.6 101 52.5
CAN.G407.75 Capsicum annuum HOM05D000367 ORTHO05D001438 3.3e-09 65.9 104 53.8
FAN09G1569 Fragaria x ananassa HOM05D000367 ORTHO05D001438 3.3e-09 65.9 148 45.3
MSTRG.9421 Avicennia marina HOM05D000367 ORTHO05D001438 4.3e-09 65.5 97 49.5
Psat5g303520 Pisum sativum HOM05D000367 ORTHO05D001438 5.6e-09 65.1 107 50.5
TPR.G37168 Trifolium pratense HOM05D000367 ORTHO05D001438 7.3e-09 64.7 107 51.4
Phvul.005G178800 Phaseolus vulgaris HOM05D000367 ORTHO05D001438 9.5e-09 64.3 111 47.7
CANSAT56G1125 Cannabis sativa HOM05D000367 ORTHO05D001438 1.2e-08 63.9 102 48.0
AUR62011510 Chenopodium quinoa HOM05D000367 ORTHO05D001438 1.2e-08 63.9 110 51.8
A07p45450 Brassica napus HOM05D000367 ORTHO05D001438 1.6e-08 63.5 103 52.4
BraA07t32049Z Brassica rapa HOM05D000367 ORTHO05D001438 1.6e-08 63.5 103 52.4
Manes.11G058000 Manihot esculenta HOM05D000367 ORTHO05D001438 2.1e-08 63.2 101 48.5
ECA234G2864 Erigeron canadensis HOM05D000367 ORTHO05D001438 2.8e-08 62.8 103 46.6
Ca_01052_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 2.3e-07 59.7 102 50.0
Migut.D01083 Erythranthe guttata HOM05D000367 ORTHO05D001438 4.0e-07 58.9 106 47.2
C06p54280 Brassica napus HOM05D000367 ORTHO05D001438 5.2e-07 58.5 101 49.5
BolC6t40441H Brassica oleracea HOM05D000367 ORTHO05D001438 5.2e-07 58.5 101 49.5
Eucgr.J03072 Eucalyptus grandis HOM05D000367 ORTHO05D001438 8.9e-07 57.8 50 62.0
GSVIVG01017355001 Vitis vinifera HOM05D000367 ORTHO05D001438 8.9e-07 57.8 105 49.5
FAN05G0721 Fragaria x ananassa HOM05D000367 ORTHO05D001438 1.2e-06 57.4 122 44.3
RcHm_v2.0_Chr2g0135071 Rosa chinensis HOM05D000367 ORTHO05D001438 1.5e-06 57.0 102 49.0
Potri.003G031800 Populus trichocarpa HOM05D000367 ORTHO05D001438 2.0e-06 56.6 102 45.1
FAN02G2757 Fragaria x ananassa HOM05D000367 ORTHO05D001438 2.6e-06 56.2 122 45.9
EL10Ac9g21879 Beta vulgaris HOM05D000367 ORTHO05D001438 3.4e-06 55.8 110 45.5
Ah.01g020540 Amaranthus hybridus HOM05D000367 ORTHO05D026474 5.8e-06 55.1 59 59.3
Sabra03G0018100 Salix brachista HOM05D000367 ORTHO05D001438 5.8e-06 55.1 85 54.1
Glyma.08G213401 Glycine max HOM05D000367 ORTHO05D001438 7.5e-06 54.7 75 49.3
Lj3g0006241 Lotus japonicus HOM05D000367 ORTHO05D001438 9.8e-06 54.3 102 47.1
Hund06553 Selenicereus undatus HOM05D000367 ORTHO05D001438 9.8e-06 54.3 105 45.7


User provided reference genes

Program Settings