Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.6e-65 251.9 125 100.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 2.2e-61 238.8 124 92.7
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 8.5e-61 236.9 124 91.9
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.2e-60 234.6 123 91.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 4.2e-60 234.6 123 91.1
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 4.2e-60 234.6 124 92.7
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.4e-60 233.4 123 90.2
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.2e-59 233.0 124 89.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.0e-58 229.9 120 92.5
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.4e-58 229.6 120 92.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.4e-58 229.6 124 88.7
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.8e-58 229.2 124 88.7
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.3e-58 228.8 124 88.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.0e-58 228.4 124 87.1
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 88.7
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.2e-58 227.6 124 87.9
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.5e-57 226.1 124 88.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.0e-57 225.7 122 88.5
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.3e-57 224.9 122 88.5
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 9.7e-57 223.4 124 87.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 9.7e-57 223.4 121 88.4
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.7e-56 222.6 124 87.1
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.2e-56 222.2 124 87.9
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 2.2e-56 222.2 124 86.3
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.8e-56 221.9 120 90.0
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.7e-56 221.5 120 88.3
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 6.3e-56 220.7 123 88.6
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 6.3e-56 220.7 120 88.3
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 6.3e-56 220.7 124 83.9
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 8.2e-56 220.3 124 85.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.4e-55 219.5 120 86.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.4e-55 219.5 121 85.1
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.8e-55 219.2 121 82.6
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.8e-55 219.2 120 87.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.8e-55 219.2 120 88.3
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.4e-55 218.8 123 84.6
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 3.1e-55 218.4 124 86.3
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 3.1e-55 218.4 121 83.5
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 4.1e-55 218.0 124 86.3
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 5.3e-55 217.6 121 86.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 5.3e-55 217.6 122 86.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 7.0e-55 217.2 121 83.5
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 7.0e-55 217.2 120 86.7
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 7.0e-55 217.2 120 86.7
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 9.1e-55 216.9 122 85.2
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.2e-54 216.5 120 85.8
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.6e-54 216.1 120 85.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.6e-54 215.3 121 85.1
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.6e-54 215.3 120 86.7
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 2.6e-54 215.3 124 83.9
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.5e-54 214.9 121 82.6
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 3.5e-54 214.9 121 84.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.5e-54 214.5 120 85.0
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 5.9e-54 214.2 120 86.7
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 5.9e-54 214.2 120 85.0
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 5.9e-54 214.2 120 85.0
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.7e-54 213.8 121 83.5
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 7.7e-54 213.8 121 82.6
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-53 213.4 121 83.5
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.3e-53 213.0 120 84.2
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.2e-53 212.2 121 81.0
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 2.2e-53 212.2 124 83.1
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.9e-53 211.8 121 82.6
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.9e-53 211.8 121 81.8
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 5.0e-53 211.1 120 82.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 5.0e-53 211.1 124 84.7
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 6.5e-53 210.7 120 82.5
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 6.5e-53 210.7 124 83.1
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 6.5e-53 210.7 124 83.1
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.5e-53 210.7 124 83.1
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 6.5e-53 210.7 124 83.1
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 6.5e-53 210.7 121 81.0
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 6.5e-53 210.7 121 81.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 6.5e-53 210.7 121 81.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 8.5e-53 210.3 121 81.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.5e-52 209.5 124 82.3
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-52 209.1 124 80.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 2.5e-52 208.8 121 81.0
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 7.2e-52 207.2 140 74.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.2e-51 206.5 121 79.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.6e-51 204.9 118 81.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.7e-51 204.5 120 79.2
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.0e-50 203.4 124 77.4
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.0e-50 203.4 120 80.0
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.8e-50 202.6 120 78.3
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.8e-50 202.6 123 75.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 4.0e-50 201.4 120 78.3
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 9.7e-49 196.8 125 73.6
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 9.7e-49 196.8 121 74.4
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.8e-48 195.3 120 73.3
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.4e-47 192.2 112 80.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 7.0e-47 190.7 116 78.4
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.1e-43 177.6 109 76.1
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.0e-42 176.8 104 80.8
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.0e-42 176.8 120 67.5
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.8e-42 176.0 120 70.0
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-42 175.6 105 77.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 8.8e-42 173.7 120 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 3.7e-40 168.3 120 64.2
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.1e-39 166.8 121 69.4
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.7e-37 159.5 89 83.1
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.9e-37 158.7 85 88.2
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.0e-34 150.2 129 63.6
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 2.6e-33 145.6 83 85.5
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.0e-31 137.5 80 80.0
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.3e-28 128.6 79 79.7
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.3e-28 128.6 79 79.7
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.3e-28 128.6 79 79.7
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.3e-28 128.6 78 78.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 4.3e-28 128.3 103 67.0
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 8.0e-27 124.0 64 87.5
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.4e-26 123.2 79 75.9
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.4e-26 123.2 79 75.9
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 4.0e-26 121.7 120 57.5
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 5.2e-26 121.3 79 74.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.6e-19 99.8 112 45.5
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 8.9e-18 94.0 120 43.3
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-16 89.4 86 57.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 7.0e-15 84.3 96 53.1
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.7e-13 79.7 41 85.4
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 9.5e-12 73.9 67 58.2
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.6e-11 72.0 41 78.0
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 6.8e-10 67.8 104 33.7
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.5e-09 66.6 33 87.9
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 2.6e-09 65.9 39 74.4
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 5.8e-09 64.7 103 35.0
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 6.4e-08 61.2 152 29.6


User provided reference genes

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