Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.4e-134 483.0 258 100.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 3.9e-100 368.6 252 81.0
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-99 365.9 257 78.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 7.3e-99 364.4 255 80.0
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 4.7e-98 361.7 252 78.6
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.1e-97 359.0 251 77.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 6.8e-97 357.8 255 77.6
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.5e-96 356.7 255 76.9
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.5e-96 356.7 255 76.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-96 355.9 253 77.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 7.5e-96 354.4 254 75.6
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 7.5e-96 354.4 255 76.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.3e-95 353.6 248 79.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.9e-95 352.4 252 76.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.9e-95 352.4 248 78.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.1e-94 348.6 253 75.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.2e-93 347.1 253 75.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.2e-93 347.1 265 72.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.1e-93 346.3 255 75.7
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.5e-93 345.5 253 75.5
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.6e-93 345.1 254 72.4
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 6.0e-93 344.7 255 74.9
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 7.8e-93 344.4 248 78.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.3e-92 343.6 256 76.6
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.9e-92 342.0 249 76.3
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 4.3e-91 338.6 252 74.2
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.3e-91 337.8 248 75.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 7.3e-91 337.8 253 72.7
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 7.3e-91 337.8 256 74.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.1e-90 336.3 248 73.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 8.1e-90 334.3 255 72.9
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.1e-89 334.0 251 72.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.1e-89 332.4 244 73.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 6.8e-89 331.3 252 73.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 6.8e-89 331.3 252 73.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.2e-88 330.5 251 70.9
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.0e-88 329.7 257 72.8
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.6e-88 329.3 251 70.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.8e-88 328.2 254 70.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.6e-88 327.8 253 73.9
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 9.9e-88 327.4 254 72.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.7e-87 326.6 255 71.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.7e-87 326.6 255 72.2
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.9e-87 325.1 256 73.0
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.4e-87 324.3 251 70.5
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 8.4e-87 324.3 251 73.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.4e-86 323.6 254 73.2
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.9e-86 323.2 246 74.4
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.9e-86 323.2 244 72.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.2e-86 322.4 242 71.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 7.1e-86 321.2 255 71.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.2e-85 320.5 246 71.5
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.7e-85 319.3 255 71.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.6e-85 318.5 255 71.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 6.0e-85 318.2 244 71.3
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.8e-85 317.8 247 73.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.0e-84 315.8 255 71.8
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.0e-84 315.8 248 71.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.9e-84 315.5 252 68.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 8.6e-84 314.3 248 69.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 8.6e-84 314.3 253 71.9
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 8.6e-84 314.3 256 71.1
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-83 313.9 255 70.6
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.5e-83 313.5 257 72.4
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-83 313.2 246 69.1
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.5e-83 312.8 244 70.9
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.5e-83 312.8 248 69.8
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.3e-83 312.4 248 71.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.6e-83 311.6 257 71.2
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 7.3e-83 311.2 257 71.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.6e-82 310.1 244 70.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.6e-82 310.1 255 69.8
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 4.7e-82 308.5 255 69.8
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.1e-81 307.4 239 69.5
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.4e-81 307.0 244 67.6
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-81 307.0 246 67.9
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.4e-81 306.2 207 72.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.1e-81 305.8 200 74.5
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.0e-81 305.4 345 54.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.2e-81 305.1 238 68.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 6.8e-81 304.7 241 70.1
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.2e-80 303.9 239 69.5
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.0e-80 303.1 252 69.4
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.4e-80 302.4 250 68.0
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.4e-80 302.0 248 67.7
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.8e-80 301.6 247 72.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.3e-79 300.4 256 68.4
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.9e-79 299.3 250 67.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.9e-79 299.3 254 68.5
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 3.8e-79 298.9 248 67.7
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.4e-78 296.2 245 66.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.7e-77 292.7 278 64.0
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 4.6e-77 292.0 231 68.4
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 6.0e-77 291.6 260 63.1
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.3e-76 290.4 257 66.5
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.3e-76 290.4 248 66.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.3e-76 289.7 244 65.6
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.0e-76 289.3 295 60.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.9e-76 288.9 246 65.9
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 3.9e-76 288.9 274 61.7
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 8.7e-76 287.7 246 64.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.5e-75 287.0 193 73.1
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.5e-75 286.2 246 65.4
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.1e-73 279.3 256 67.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.0e-73 278.9 256 67.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 6.9e-73 278.1 251 62.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.4e-70 270.4 253 62.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.9e-70 270.0 257 60.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 9.3e-70 267.7 248 64.5
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.2e-69 267.3 333 52.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 3.3e-67 259.2 248 60.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.1e-65 252.7 288 54.5
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.4e-62 243.8 180 71.1
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.2e-62 242.3 247 55.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.6e-61 240.4 250 58.0
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.1e-61 240.0 256 54.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-59 233.8 253 56.5
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 9.0e-57 224.6 248 55.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.2e-56 224.2 246 55.7
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.0e-56 223.4 242 57.0
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 3.4e-56 222.6 216 57.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.8e-55 219.2 222 55.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.5e-54 216.5 150 71.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 4.6e-53 212.2 136 77.2
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.3e-49 198.7 133 76.7
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 6.9e-49 198.4 171 64.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-43 181.0 258 43.4
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-43 181.0 140 69.3
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.7e-42 176.0 150 71.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.1e-41 172.9 143 62.9
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.8e-36 157.1 192 49.0
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.8e-34 149.1 226 39.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.1e-33 146.4 340 39.4
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 2.9e-31 139.8 244 36.9
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-30 136.3 203 48.8
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 7.2e-30 135.2 218 39.0
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 3.0e-28 129.8 120 69.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.3e-26 124.4 110 68.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 5.3e-25 119.0 72 83.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.5e-22 110.9 92 58.7
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.2e-20 102.4 58 81.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-17 94.7 79 58.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 5.3e-17 92.4 79 57.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.2e-14 83.2 83 65.1
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.8e-09 67.4 158 34.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.9e-08 62.4 184 31.5
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.3e-07 61.2 64 48.4
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.3e-07 61.2 53 62.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-06 58.2 34 76.5
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.9e-06 57.4 31 80.6
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 7.2e-06 55.5 137 30.7


User provided reference genes

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